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While attempting to upload a hierarchical folder structure today, we encountered the following error:
Progress: 1% - sending /Volumes/all_staff/Robert Bastidas/Manuscripts/CSHL : Bacterial pathogenes…
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mga stopped when processing an empty "final-contigs.fa" file. This is the updated sunbeam version.
![screen shot 2017-09-22 at 1 23 55 pm](https://user-images.githubusercontent.com/22323395/30762506-…
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I can't see where this comes from?
It's IEA from GO:0003714 but this gene product is not GO:0003714?
I'm not sure which GOC pipeline this comes from?
YGL185C Putative protein with sequence sim…
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yeban updated
7 years ago
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The feature of my output gtf file from stringtie contains only "exon" and "transcript", no "CDS"," start_codon" and "stop_codon". Is that normal? Does anyone have this experience before?
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Hi, When running the script NONCCDS_orf_finder.R I keep getting this error:
[1] "--- non-CCDS ORF finding --- Mon Feb 8 11:22:52 2016"
Error in { : task 1 failed - "non-character argument"
Calls: %…
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One of the best interests of metatranscriptomes when mapped to metagenomic assemblies is to work at the gene level within a genomic bin.
Today, we use myRAST for detecting ORFs while we use Prodigal f…
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After grading the assignment, it appears that my explanation of open reading frames (ORFs) was not very effective. Everyone's code implementation looks pretty good (i.e. it runs and produces output),…
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It's useful to have ORF finders, especially for viruses like dengue and HCV which are encoded by a single polyprotein. Could you add the following wrappers:
From the Galaxy toolshed:
[get_orfs_or_cds…