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Hi,
I am new in OpenMM Simulation, but I would like to run a simulation for representatives from PDBBind dataset.
I encountered a problem with the first complex I chose - 6G84.
I ran DockPrep usi…
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How can I get .ply corresponding to .pdb as provided in download dataset?
In other words, how does this work convert pdb to ply?
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Hi @dauparas
Thanks for the good job done, I am already using ProteinMPNN and would like to train or finetune it on a custom dataset.
Are there some scripts on how to process PDB files into the f…
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**Describe the problem**
PROTACs are a class of therapeutics that flag target proteins to a cell's waste disposal system, instead of the traditional binding to targets. It has been very promising due…
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Hi Team,
I have successfully finetuned a QLoRA adapter on a custom dataset. When I try to load it in full precision, it gets loaded and works well
But this takes too much time and GPU memory to …
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### LanceDB version
v0.13.0
### What happened?
Query except FTS requires vector column name to be passed in.
Failed to infer vector column at
https://github.com/lancedb/lancedb/blob/main…
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### bug描述 Describe the Bug
# Paddle的 Dataloader 遇到纯文本数据时报错 StopIteration
**看上去Paddle的Dataloader并不支持纯str类型的数据，而Pytorch则不然**
下面是[Dataloader文档中的样例代码](https://www.paddlepaddle.org.cn/documentatio…
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I think I have discovered an inconsistency in the `d20200109_HIRANO_PDB` dataset:
```
ds = csr_dataset("d20200109_HIRANO_PDB")
unique(ds$ports$CSR_PORT) # gives 0
unique(ds$data$CSR_PORT) # give…
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Hi! I want to test the model using the test dataset that used in your work and you said that we can download the supporting information file to find the list of PDB IDs for each data set, but I don't…
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Currently when debugging code you only get an error after it is raised in the except clause in the main try except block in MTEB.run. This is problematic as you don't have access to the context of whe…