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I was following the tutorial "Phylogeny Simulation and Diversification Rate Analysis with TESS" and it was going well until a point at which it stopped, returning the error "Error in if (max.progress …
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Our current goal for curation is for the phylogeny to visually replicate the one in the paper as closely as possible, which can be done by tweaking the Newick string. To this end, it might be useful t…
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Phyloreference definitions often contain a lot of useful information in the "Reference Phylogeny" section: apart from a citation to a particular phylogeny, they can also refer to other phylogenies, ho…
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CGH = Comparative Genomic Hybridization and has to do with strain placement in phylogeneic tree: https://www.ncbi.nlm.nih.gov/pubmed/21978207?dopt=Abstract
Another related publication is:
https://ww…
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**first of all:**
lib(ape)
lib(phytools)
**Using cophyloplot, code:**
tree1
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Hi, I noticed that arc drawing on phylogenies doesn't fully work. It looks like only some OTUs will be labelled with an arc even though the mapping file includes colours for all the nodes.
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Currently, given a taxon, there may be more trees available/appropriate at higher or lower levels of organization than are displayed/available to a user.
Create a query/dropdown that makes the approp…
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We currently support editing three kinds of taxonomic units as parts of either phyloreference specifiers or phylogeny nodes: scientific names, specimen identifiers and external references. However, th…
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Hi,
I am interested in using ragout to scaffold a bat genome that I am sequencing.
To run it I need to align it with other genome assemblies for scaffolding.
I wanted to inquire about parameterizi…
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Include no of SNPs used to build SNP tree and no of genes used to build core gene phylogeny.