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Do it in R.
One tree for all e.g. MarDB genomes, another for the ones we found in our data.
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- [ ] Eliminate NULLS
- [ ] Add not NULL constraints
- [ ] Consolidate or distinguish duplicates
- [ ] Add uniqueness constraints
- [ ] Ensure phylogeny column is whitespace-normalized
# Eliminate exi…
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CGH = Comparative Genomic Hybridization and has to do with strain placement in phylogeneic tree: https://www.ncbi.nlm.nih.gov/pubmed/21978207?dopt=Abstract
Another related publication is:
https://ww…
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**first of all:**
lib(ape)
lib(phytools)
**Using cophyloplot, code:**
tree1
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Add BUSCO completeness to any assembled genomes.
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Open Tree of Life induced subtrees (as added by #40) include a large number of internal nodes that only have a single child, which can make visualizing the phylogeny complicated. However, we can't jus…
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It would be cool to allow users to overload `mul!` for the transition matrix, especially when they have structured transitions that cannot be easily represented in a single matrix object.
Examples:…
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Currently, reasoning results are maintained even if the phylogenies change. Whenever the phylogeny changes, the reasoning results should be deleted so that re-reasoning is required
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Help solve the problem, please. I suppose it's about the program modeltest-ng. Since only the portable version was installed. Other versions have the output `illegal instruction`
Debian 10.
```
S…
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Our current goal for curation is for the phylogeny to visually replicate the one in the paper as closely as possible, which can be done by tweaking the Newick string. To this end, it might be useful t…