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proposed definition:
A transcriptional cis regulatory region (ranges from 0.5kb to 3kbp) that when located between an enhancer and a promoter, the insulator prevents the enhancer from modulating expre…
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Hi,
I am beginning to work with Squire to analyze L1 mobile elements in knockout cell lines. I am specifically interested in obtaining antisense expression on L1 (that should include transcripts fr…
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Hi, we need to know what the user has selected, is there any way to have a callback to know it?
Thanks in advance.
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### What would you like to see!
I'm evaluating OnCall for alert notifications at our small company, but am a little concerned that the actual UX of the product, particularly on Slack doesn't match ou…
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There should be two glyphs for left and right locus and they should be added to the set of possible glyphs
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https://doi.org/10.1101/099879
> Massively parallel reporter assays (MPRAs) are a method to probe the effects of short sequences on transcriptional regulation activity. In a MPRA, short sequences a…
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# Crash Course in Open Targets Part 3: Taming the Data Downloads - Clare's Blog
An overview of accessing Open Targets data through the data downloads using PySpark
[https://clarewest.github.io/blog/…
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@KasitC for compatibility with single molecule sorting around promoters we need to implement strand-aware sorting.
1. Create a MakeBins function which takes as argument
- bins "type" (singleTF, T…
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I was trying to make metagene plot of my two bam files over mm9 promoters. I tried:
```
>promoterMnase_bammg_prmoter_mnase mg_prmoter_mnase mg_prmoter_mnase$plot()`
produce data table : ChIP-Seq
…