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Hi DEP's authors,
I have some trouble with the p-value adj. compute by fdrtool.
In my design, I have 7 samples of cond1 and 19 samples of cond2.
If I use all these samples, DEP works with 1844 …
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I love the design and usefulness of this page.
I did encounter a issue with the math, I know you found it elsewhere.
I'll start with some examples:
Example 1 (high target percentage gives negativ…
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作者您好！
``文中提及这种形式的符号是用来放分子的特征。文中说到“We design the following prompt to organize the molecular or …
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Current design is PRO:protein -BFO2:occurs_in-CL:cell, which is not correct.
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* phold version: version 0.1.4
* Python version: 3.10.14
* Operating System: Linux
### Description
I was attempting to run Phold on a GenBank file ([gbk]((https://github.com/user-attachments/fi…
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On 2024-06-12 8:19 pm, Romeo Stevens wrote:
> Thanks for giving us a try. The original recipe will be posted to the mealsquares website.
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I would like to propose the idea for "Pipeline for customized phylogeny based on user provided gene/protein sequence(s) using Open Tree of Life data".
Suppose a researcher has newly sequenced a gene…
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Use this thread to discuss potential figures. I think we need about one figure per section depicting the key concept from that section.
@Arokiarex is drafting a figure for the quantitative strateg…
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# ePlant3 Interactions View Blueprint and Requirements
by V. Lau (reviewed by N. Provart)
## Introduction
Genes and their gene products (proteins) can interact with other genes and gene produ…
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Dear Vadim
In the diann results, most of the Protein.ids are uniprot accession ids (from the fasta file I used), but some are accession ids combined by ";" . Some are combined with cRAP-***, I thin…