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All the miRNA_gene_family are information artifacts, but they should probably be classes of (material) miRNA, and superclass of their respective (RNA) members. If they are, then the "gene family" is …
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Would it be possible to share a link to the research or reasoning behind the `soft_to_angle` Module for someone new to structural protein problems?
My current hunch is that you have run a mixture …
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Hi Evan,
Y ran tephra:
` nohup tephra all -c tephra_config.yml &`
since I want al types of TEs. I use a repbase.fasta from Solanum tuberosum for the repeatdb and left the others databases with the…
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Hello, teacher!
I followed your github operation steps under the installation, I used prodigal to predict the virus protein .faa and.gff files. Then run the code as follows:
nohup ./metafisher/meta…
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The nomenclature used in PMID:9971792 seems to follow Kabat
The TCR information in the paper is
| v.beta | cdr3.beta | j.beta | d.beta | v.alpha | cdr3.alpha | j.alpha |
|…
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Hi Morgan,
thanks for your great work in paperblast and the rest of your functional annotation toolkit!
Do you have any plan to enhance the search step with structure-based homology searches suc…
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I'm trying to implement the SCOP40 test using the latest foldseek. The `creatdb` command completes; the `easy-search` command runs for a while but then hangs indefinitely. Advice welcomed for how to i…
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https://github.com/geneontology/go-ontology/issues/16048
I suggest to get rid of these if the "with" field can be applied.
Some refer to a single specific gene product (with field)
some are not…
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Dear authors! Thank you for the program. Is it possible to realize identification of eukaryotic viruses from contigs bypassing assembly?
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https://alpha.patricbrc.org/view/Feature/PATRIC.139.22.AYCB01000014.CDS.1316.1486.rev#view_tab=overview
I have run into this a lot recently. A short CDS, but I have to go to the feature page and t…