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Hello,
According to our rules not to capture specific gene products, I think those terms should be obsoleted:
Number EXP annotations | Term
-- | --
10 | vitamin D receptor binding
39 | thyr…
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All the miRNA_gene_family are information artifacts, but they should probably be classes of (material) miRNA, and superclass of their respective (RNA) members. If they are, then the "gene family" is …
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Gene orthology knowledge curation (i.e. from the [Panther database]()) relates gene instances to gene families. It's relatively easy to infer guess what concept nodes need to be captured, i.e. `bioli…
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Hi Evan,
Y ran tephra:
` nohup tephra all -c tephra_config.yml &`
since I want al types of TEs. I use a repbase.fasta from Solanum tuberosum for the repeatdb and left the others databases with the…
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Hi, thanks for the great repo. I'm interested in generating sequences with bmDCA for protein families that have around ~20k samples with ~400-600 total aligned positions (and no position with more tha…
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Hello, teacher!
I followed your github operation steps under the installation, I used prodigal to predict the virus protein .faa and.gff files. Then run the code as follows:
nohup ./metafisher/meta…
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I'm facing an issue while using Diamond (version X.X.X) to create a database using the "refseq_AA_13_4_23.fasta" file and the taxonomy mapping file "prot.accession2taxid.FULL". The database creation p…
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https://alpha.patricbrc.org/view/Feature/PATRIC.139.22.AYCB01000014.CDS.1316.1486.rev#view_tab=overview
I have run into this a lot recently. A short CDS, but I have to go to the feature page and t…
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The nomenclature used in PMID:9971792 seems to follow Kabat
The TCR information in the paper is
| v.beta | cdr3.beta | j.beta | d.beta | v.alpha | cdr3.alpha | j.alpha |
|…
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Greetings -
I've started 4 phylogenetic trees in the morning today, Feb 24th (10 hours ago) . One of them worked well and fast, but 3 others are not done still. Is it possible to find out why they …