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Hi, I would like to know if my approach to calculate the average of the relative abundance of any taxon is correct !!!
If I want to know if, to calculate the relative abundance (percent) of each fa…
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Hi,
I am currently running `coverm genome` to estimate the abundance of multiple viral genomes in my samples. However I am not sure which is the best way to do this:
- Is it correct to specify w…
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### Describe the bug
From some quick testing, I need more than 83 energy bins for the thermal model to work.
Should be able to supply a single energy bin and the model should still work.
The f…
ianan updated
2 years ago
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Thought it might be useful to organize effort around specific goals for the phylofactor plugin. After playing around with tutorials and test data, here's what I came up with as a starting point:
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Hi,
I am trying to use differential heat tree using metacoder and running the following code to calculate differences in abundances based on the two groupings.
```r
families$data$diff_table Warn…
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Label-free quantification
Label-free quantification is a method that aims to determine the relative amount of proteins in two or more biological samples. It may be based on precursor signal intensity…
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Hi,
We are interested in using TSFitPy for estimating isotopic fractions of Oxygen in Hydrogen-deficient Carbon (HdC) stars (these have an unusually high abundance of 18O) by using 12C16O and 12C18…
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Hi,
I'm following the ["Workflow for Microbiome Data Analysis"](http://web.stanford.edu/class/bios221/MicrobiomeWorkflowII.html) to analyse some 16S and ITS datasets. I'm unsure about the effects t…
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I am trying to select the top 1% of ASVs in relative abundance to do a barplot. Could somebody help me?. I tried this code:
obj
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viromescan -p 3 -m /home/richa-pc/miniconda3/viromescan -1 SRR15882835.fastq -2 SRR15881502.fastq -o viromescan_sample_A_covid19
viromescan: command not found