-
Hi all, having some trouble getting my head around permanova/adonis. Would really appreciate
Had a request from a reviewer - "could the authors run a PERMANOVA to check what factors have an effect…
-
Hello,
I acknowledge that I have submitted several posts to this GitHub Discussions in the past few weeks, and I always appreciate your prompt and helpful replies! This package and your replies have …
-
Dear CAMISIM team,
I am starting to try and use CAMISIM for a bunch of projects we have, but wonder if all of them will fit. For instance, is it possible to use CAMISIM for simulating amplicon sequ…
-
Hi,
When I want to use `tacoplot_stack ` like so:
`tacoplot_stack(tidy_physeq_rarefied, x = Protocol2)
`
The y-axis is not correctly adjusted to range from 0 to 1 (0% to 100%), so represent…
-
couldn't start due to connection lost.
check up on Monday
-
Dear developer:
I can't understand how to calculate the contig and bin's abundance? w…
-
Looking to implement enrichment for more than 2 isotopes.
Currently thinking you could choose to bias high or low, to a certain percent on the highest or lowest mass isotope. For diffusion or centr…
-
Hello everybody,
I have a small issue which is probably just a rookie mistake. I have a dataset of vaginal microbiota; Illumina HiSeq sequencing was performed, I have run the Dada2 pipeline, and m…
-
For me, the relative abundance is the proportion of a bin in all bacteria in a sample. The value of abundance should be less than 100%. But in my result ` abundance_table.tab`, there are some value mo…
-
Hello,
Thanks for a very useful annotation program! I ran MEBS on a large data set of 550 MAGs. I got an output file that seems correct and complete (attached) but the .png files to visualize the r…