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inputs:
1. start with output of #28 ? or start with files from SILVA?
steps:
1. #28 or `parse_silva_taxonomy`? any way to make auto-download optional?
2. `screen_seqs`
3. `filter_seqs_length_by…
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This is related to this [SO quesiton](https://stackoverflow.com/questions/56408936/performance-issue-with-sd-when-indexing-by-variable/56409174#)
```r
set.seed(102938)
dd
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Hi, is it a desired behavior? Size of resulting data.table is very similar if you keep names as factor.
library(ORFik)
attach(loadNamespace(ORFik)
##only change is the if statement for keep.nam…
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Dear CelliD developers,
I am using CelliD to analyze my own scRNA-seq data from 10X genomics. When running the 'RunCellHGT', I encountered the following errors:
Error in rep(seq(length(PathwayMa…
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@gsrohde has reported test failures on his computer that don't occur during the GitHub action checks: https://github.com/biocro/biocro/pull/88#pullrequestreview-1904886651
It's possible that the fi…
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Hello,
I am trying to run the pipeline for chicken samples and have tried to create a custom genome reference for the pipeline. However, after finishing the steps here [https://github.com/ENCODE-de…
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Comparing
```
methods(class = "IDate")
# [1] as.Date as.list as.POSIXct c coerce cut
# [7] initialize mean rep round seq show
# …
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### 🐛 Describe the bug
With a 2D spatial neighborhood pattern, flash attention is orders of magnitude slower than dense attention:
hlc=2
seq_length : 192
flex attention : 0.0015106382369995117 […
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I'm running easy-search for a set of fasta files. For the majority of files everything is fine, for a small subset i'm getting the same error after prefiltering.
That's an example of my command:…
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I tried to reproduce the results in the sample data in the PAS OPAG workbook, but it crashes in groupAges. Trying to track down the error there seem to be points in the chain of functions where the a…