bokulich-lab RESCRIPt issues

bokulich-lab / RESCRIPt

REference Sequence annotation and CuRatIon Pipeline

BSD 3-Clause "New" or "Revised" License

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issues

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How can I find the installation package for RESCRIPt that is compatible with QIIME 2024.2.0?

#210 tata831 closed 3 weeks ago
1
ENH: added `--p-max-seq-len` to `extract-seq-segments` and associated test code

#209 mikerobeson closed 1 week ago
2
ENH: adds `keeplength` option to ensure the correct region is extracted when using primers.

#208 mikerobeson opened 4 weeks ago
3
ENH: Added ranks and rank-propagation parameters to `get-ncbi-genomes`

#207 VinzentRisch closed 1 month ago
3
LANG: add pathogenome distro

#206 lizgehret closed 1 month ago
1
TEST: fixes test failure due to updated GH runner log formatting

#205 lizgehret closed 1 month ago
0
IMP: replace volatility with lineplot for `evaluate_*` visualizers

#204 lizgehret closed 1 month ago
6
ENH: Adds NCBI api-key option

#203 mikerobeson closed 2 months ago
1
ENH: Add actions to fetch data from BV-BRC.

#202 VinzentRisch closed 1 month ago
7
SILVA 138.2 ssu-nr99 database, only 6 levels

#201 feixiang1209 closed 3 months ago
1
ENH: Add support to fetch data from BV-BRC.

#200 VinzentRisch closed 1 month ago
0
ENH: Added ability to specify segment coverage value for `extract-seq-segments`.

#199 mikerobeson closed 3 months ago
0
ENH: Adds SILVA 138.2

#198 mikerobeson closed 3 months ago
1
REF: q2-types updates

#197 ebolyen closed 4 months ago
0
ENH: Add SILVA 138.2 to `get-silva-data`

#196 mikerobeson closed 3 months ago
0
ENH: extract-seq-segments add param "min_coverage"

#195 nbokulich closed 3 months ago
1
get-ncbi-genomes: custom rank information

#194 nbokulich closed 1 month ago
1
FIX: update `get-ncbi-genomes` to use genome accession IDs as taxonomy IDs

#193 misialq closed 5 months ago
3
MAINT: refactor GTDB taxonomy parser

#192 nbokulich closed 5 months ago
0
BUG: gtdb taxonomy parser

#191 nbokulich closed 5 months ago
1
Revert "DEP: q2-longitudinal"

#190 misialq closed 5 months ago
1
TEMPFIX: skip unit tests that rely on q2-longitudinal if it is not installed

#189 nbokulich closed 5 months ago
1
TST: fixing test failures from python 3.9 update

#188 lizgehret closed 6 months ago
1
CI: shotgun to amplicon

#187 lizgehret closed 6 months ago
0
CI: adds command to run tests

#186 lizgehret closed 6 months ago
1
get-ncbi-data Command Error

#185 rachelhawrit closed 6 months ago
1
ENH: Adds ability to fetch GTDB v220 to get-gtdb-data

#184 mikerobeson closed 6 months ago
0
ENH: Add the ability to fetch the latest GTDB database (v220) to `get-gtdb-data`

#183 mikerobeson closed 5 months ago
1
full SILVA LSU download

#182 sghignone closed 7 months ago
3
Add UNITE v10 DOIs

#181 colinbrislawn closed 7 months ago
0
which rescript version for qiime2 2022.11?

#180 PeSteff closed 8 months ago
2
Fix misplaced comma in bibtex

#179 ebolyen closed 9 months ago
0
DOC: fixes citation formatting reqs for sphinx docs builds

#178 lizgehret closed 9 months ago
1
LINT: fixing a couple of flake8 errors

#177 lizgehret closed 9 months ago
0
No more types genomics

#176 Oddant1 closed 9 months ago
3
providing primers for `trim-alignment` provides different output vs explicit column positions for the same primers.

#175 mikerobeson opened 9 months ago
0
ENH: adds `--p-n-threads` option to `trim-alignment`

#174 mikerobeson closed 6 months ago
1
ENH: `trim-alignment`, add `--p-addfragments` flag when using primer search option.

#173 mikerobeson closed 9 months ago
1
fixed README badges

#172 nbokulich closed 10 months ago
0
Rescript installation in q2-amplicon-2023.9

#171 ARW-UBT closed 10 months ago
1
Update of README.

#170 mikerobeson closed 10 months ago
17
get-gtdb refactor

#169 mikerobeson closed 10 months ago
0
ENH: Add option to download the corrected `214.1` GTDB database.

#168 mikerobeson closed 10 months ago
2
ENH: Add option to download `ssu_all_<release>.tar.gz` from GTDB.

#167 mikerobeson closed 10 months ago
1
patch get_unite

#166 colinbrislawn closed 1 year ago
0
Update help text for clarity: `dereplicate --p-mode super`

#165 mikerobeson opened 1 year ago
0
DEP: drop q2-longitudinal

#164 ebolyen closed 1 year ago
3
Remove heavy dependencies

#163 ebolyen opened 1 year ago
7
Update ci-dev.yaml

#162 ebolyen closed 1 year ago
5
CI: use qiime2/distributions for release cycle

#161 ebolyen closed 1 year ago
0