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bokulich-lab
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RESCRIPt
REference Sequence annotation and CuRatIon Pipeline
BSD 3-Clause "New" or "Revised" License
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pin joblib to version 1.1
#144
nbokulich
closed
1 year ago
0
dep: update joblib to 1.2 with new module structure
#143
lizgehret
closed
1 year ago
2
update readme for q2-2022.8
#142
mikerobeson
closed
1 year ago
1
Adds Manuscript DOI badge to README
#141
mikerobeson
closed
1 year ago
1
ENH: add vsearch's --qsegout option to extract reads
#140
mikerobeson
closed
1 year ago
7
dep/bug: missing vsearch dependency
#139
thermokarst
closed
2 years ago
2
ENH: extract sequence segments with vsearch's `--qsegout` option
#138
mikerobeson
closed
2 years ago
2
dep: update pinnings
#137
thermokarst
closed
2 years ago
1
ENH: add vsearch's `-qsegout` option to RESCRIPt
#136
mikerobeson
closed
1 year ago
3
ENH: action to get preformatted blast databases
#135
nbokulich
opened
2 years ago
1
get_unite_data functions
#134
colinbrislawn
closed
7 months ago
52
ENH: enables `merge-taxa` and `dereplicate` to handle user-defined rank handles.
#133
mikerobeson
closed
1 year ago
3
update readme
#132
nbokulich
closed
2 years ago
0
ENH: refactor + parallelize the `evaluate-fit-classifier` and cross-validate pipelines
#131
nbokulich
opened
2 years ago
0
drop experimental loo cv method
#130
nbokulich
closed
2 years ago
2
[ENH] `trim-alignment`: how to deal with gappy primer alignments?
#129
nbokulich
opened
2 years ago
1
`trim-alignment` : documentation updates
#128
nbokulich
opened
2 years ago
2
`trim-alignment` : expose multithreading
#127
nbokulich
closed
4 weeks ago
1
Error from evaluate-fit-classifier: "This classifier does not support confidence values"
#126
alexkrohn
closed
2 years ago
2
Download RefSeq Genomes and associated Taxonomy
#125
mikerobeson
closed
1 year ago
3
ENH: add action for `get_gg_data`
#124
colinbrislawn
closed
2 years ago
4
ENH: add action for `get_unite_data`
#123
nbokulich
closed
7 months ago
38
IMP: update dereplicate backfilling functionality
#122
mikerobeson
closed
1 year ago
0
Adds reverse complementing to orient-seqs
#121
jwdebelius
closed
2 years ago
8
update rescript citation to PLoS Comp Bio
#120
mikerobeson
closed
2 years ago
0
Request for function to reverse complement
#119
jwdebelius
closed
2 years ago
4
ci: alpha library api tweaks
#118
thermokarst
closed
2 years ago
2
DOC: Add better description of rank propagation
#117
mikerobeson
closed
2 years ago
1
ENH: replace-taxonomy action
#116
mikerobeson
closed
2 years ago
0
ENH: reverse transcribe support for aligned RNA fasta
#115
nbokulich
closed
2 years ago
0
BUG: set unresolved taxonomies to 'Unassigned'
#114
misialq
closed
2 years ago
0
BUG: fix 'Taxon' column to always be first after merge
#113
misialq
closed
2 years ago
6
BUG: merge_taxa reorders columns during merge
#112
misialq
closed
2 years ago
0
BUG: merge_taxa LCA modes leave empty labels when there is no LCA
#111
nbokulich
closed
2 years ago
0
MAINT: add visualization gallery link
#110
misialq
closed
3 years ago
0
add example gallery
#109
nbokulich
closed
2 years ago
1
QIIME2 error after installing RESCRIPt
#108
Channy-736
closed
3 years ago
0
Include RESCRIPt in qiime docker
#107
asafpr
closed
3 years ago
2
maint: remove duplicate types/fmts
#106
thermokarst
closed
3 years ago
1
Migrate transformers, etc... to qiime2/q2-types
#105
mikerobeson
opened
3 years ago
4
MAINT: update python to 3.8
#104
misialq
closed
3 years ago
3
Migrate to python 3.8
#103
misialq
closed
2 years ago
1
removal of RESCRIPt RNA types, etc..
#102
mikerobeson
closed
3 years ago
1
A couple of tweaks for get-ncbi-data
#101
BenKaehler
closed
3 years ago
2
issue-98 : updated minimum qiime 2 version in docs
#100
mikerobeson
closed
3 years ago
1
added LSU-138 to get-silva-data
#99
mikerobeson
closed
3 years ago
1
update documentation for 2021.2.0
#98
nbokulich
closed
3 years ago
0
Update `get-silva-data` for downloading SILVA 138.1 LSU data
#97
mikerobeson
closed
3 years ago
1
Add support for NCBI Datasets project
#96
misialq
closed
1 year ago
2
MAINT: update feature-classifier default params
#95
misialq
closed
3 years ago
1
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