issues
search
bokulich-lab
/
RESCRIPt
REference Sequence annotation and CuRatIon Pipeline
BSD 3-Clause "New" or "Revised" License
89
stars
26
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
MAINT: update python to 3.8
#104
misialq
closed
3 years ago
3
Migrate to python 3.8
#103
misialq
closed
3 years ago
1
removal of RESCRIPt RNA types, etc..
#102
mikerobeson
closed
3 years ago
1
A couple of tweaks for get-ncbi-data
#101
BenKaehler
closed
3 years ago
2
issue-98 : updated minimum qiime 2 version in docs
#100
mikerobeson
closed
3 years ago
1
added LSU-138 to get-silva-data
#99
mikerobeson
closed
3 years ago
1
update documentation for 2021.2.0
#98
nbokulich
closed
3 years ago
0
Update `get-silva-data` for downloading SILVA 138.1 LSU data
#97
mikerobeson
closed
3 years ago
1
Add support for NCBI Datasets project
#96
misialq
closed
1 year ago
2
MAINT: update feature-classifier default params
#95
misialq
closed
3 years ago
1
qiime2-2021.2 installation error
#94
jwdebelius
closed
3 years ago
2
Request for update to Taxon Table
#93
AlexaBennett
opened
3 years ago
7
ENH: add support for fetching protein seqs from NCBI
#92
misialq
closed
3 years ago
0
ENH: use add-fragments flag when aligning primers for trimming
#91
misialq
closed
3 years ago
1
VER: 2020.11.1.dev0
#90
thermokarst
closed
3 years ago
0
PACKAGING: fix conda package URL
#89
thermokarst
closed
3 years ago
0
VER: 2020.11.0.dev0
#88
thermokarst
closed
3 years ago
0
IMP: add fasta subsampling action
#87
misialq
closed
3 years ago
3
Fix broken versioneer tag (2020.11.0)
#86
thermokarst
closed
3 years ago
4
IMP: add alignment trimming action
#85
misialq
closed
3 years ago
10
Adding FeatureDate[AlignedRNASequence]
#84
mikerobeson
closed
3 years ago
8
add preprint citation
#83
nbokulich
closed
3 years ago
0
Update README.md
#82
nbokulich
closed
3 years ago
0
feature request for `dereplicate`
#81
devonorourke
opened
3 years ago
5
Silva 138 Classifier generated using RESCRIPt is not classifying Salmonella at genus level
#80
drashutosh
closed
4 years ago
1
IMP: parallelise sequence processing
#79
misialq
closed
4 years ago
0
add silva 138.1 download to get-silva-data
#78
mikerobeson
closed
4 years ago
1
MAINT: add requests to conda requirements
#77
misialq
closed
4 years ago
1
List requests in conda recipe requirements
#76
misialq
closed
4 years ago
0
evaluate-cross-validate crashing
#75
BenKaehler
closed
4 years ago
2
CI/BUG: NCBI API rate limit exceeded
#74
thermokarst
opened
4 years ago
0
add basic logo to front page
#73
nbokulich
closed
4 years ago
0
git cloning problem
#72
ShailNair
closed
4 years ago
1
Updated README.md with additional QIIME forum posts for COI databases
#71
devonorourke
closed
4 years ago
0
CI: secret, secret, I've got a secret
#70
thermokarst
closed
4 years ago
5
CI: API changes for beta action-library-packaging
#69
thermokarst
closed
4 years ago
0
IMP: adds ability to NOT propagate SILVA taxonomy
#68
mikerobeson
closed
4 years ago
17
add option to NOT propagate taxonomy in `parse_silva_taxonomy`
#67
mikerobeson
closed
4 years ago
0
Made NCBI data getting more robust and more legal
#66
BenKaehler
closed
4 years ago
0
using of NCBI 16S taxonomy data to make sequence reference database
#65
shakti83kumar
closed
4 years ago
1
get-ncbi-data tutorial and policy
#64
nbokulich
closed
4 years ago
0
added filter-taxa method
#63
nbokulich
closed
4 years ago
13
update citation for version 2020.6.1
#62
nbokulich
closed
4 years ago
0
IMP: adds super to dereplicate
#61
mikerobeson
closed
4 years ago
0
what was killed?
#60
devonorourke
closed
4 years ago
2
add super LCA and majority LCA merging
#59
nbokulich
closed
4 years ago
3
refactor dereplicate to use skbio for seq subsetting
#58
nbokulich
closed
4 years ago
2
add evaluate-classifications to evaluate-cross-validate pipeline
#57
nbokulich
closed
4 years ago
0
silence irrelevant warnings
#56
nbokulich
closed
4 years ago
0
eval seqs action
#55
nbokulich
closed
4 years ago
0
Previous
Next