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Two array access patterns from R do not work in hdf5r: linear indexing and coordinate-based indexing. Without these two methods I can't see how to access arbitrary sets of indices without first extrac…
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Hello,
I get the following error when running
```
dev rse
class: RangedSummarizedExperiment
dim: 4446140 26263
metadata(0):
assays(1): counts
rownames: NULL
rowData names(2): name bias
…
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Not sure if this is something that can be solved, but maybe mention can be made of this in the HDFView and/or HDF5 and R tutorials: HDFView shows the dimensions in a different order than R.
For the…
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**I've restructured this issue in light of metadata being an option in Parquet files - anything prior is found below the line**.
So metadata can actually be saved in Parquet files, so I'd still go …
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Hi,
I was trying to run this code and encountered an error:
aucellApp
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adokter/bioRad#156 requires compilation of vol2bird within R, instead of accessing it through Docker.
To keep code bases separate, I suggest making an R-package for vol2bird that will be a dependen…
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Hey there!
I'm trying to install this package in a [rocker/tidyverse](https://rocker-project.org/images/versioned/rstudio.html) container, but I'm running into this issue:
```
ERROR: dependenc…
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I'm working with a scCRISPR dataset from another group, I can open it with muon but not with MuData (1.8.0). Some details below. Thanks for taking a look!
```
wget -O inference_mudata.h5mu "https:…
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rhdf5 tries to run `h5cc -show` in its configure script, in order to determine the libraries to be used:
https://github.com/hhoeflin/hdf5r/blob/dc4774c03dd02219febdf57229ceb3e1ab439df7/configure.ac…
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When creating an ExperimentHub package, it is possible to define dispatch classes, so that some file types can be loaded automatically and returned as predefined objects. See `AnnotationHub::DispatchC…