const-ae glmGamPoi issues

const-ae / glmGamPoi

Fit Gamma-Poisson Generalized Linear Models Reliably

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Resync with recent developments in SparseArray/DelayedArray packages

#64 hpages closed 1 month ago
0
Add compute_lfc_se option to test_de

#63 jackkamm closed 3 months ago
3
results tables identical for all cell populations

#62 lichtobergo closed 4 months ago
3
glm_gp removes cell type from dataset

#61 pakiessling closed 4 months ago
4
installation of package ‘glmGamPoi’ had non-zero exit status

#60 NicoHadas closed 2 months ago
6
Error: 'pseudobulk' is not an exported object from 'namespace:glmGamPoi'

#59 PietropaoliLab closed 6 months ago
1
[FR] Implement `logLik.glmGamPoi`

#58 jan-glx opened 7 months ago
2
Unable to install the glmGamPoi package

#57 Kravidc closed 9 months ago
3
feat: add subsample to loc_median_fit

#56 nlubock closed 9 months ago
8
small typo

#55 nlubock closed 10 months ago
1
HDF5Array is not available for package glmGamPoi

#54 nlubock opened 11 months ago
4
Can you simulate from the fitted model or do you have recommendations for simulation?

#53 carversh closed 1 year ago
8
Upgrading from beachmat to tatami

#52 LTLA opened 1 year ago
9
overdispersion_shrinkage is not optional

#51 alexbarrera closed 1 year ago
3
Standard error of the overdispersion estimates

#50 anglixue opened 1 year ago
4
compilation error

#49 Jiayi-Wang-Joey opened 1 year ago
2
Compatibility with R 3

#48 PedroMilanezAlmeida opened 1 year ago
4
pseudobulk does not include `NA` levels

#47 const-ae closed 1 year ago
0
Questions about pseudobulk_sce

#46 f6v closed 1 year ago
3
Inconsistent dispersion estimate between MLE and quasi-MLE

#45 anglixue closed 1 year ago
1
Typo in help text for overdispersion_shrinkage

#44 DarwinAwardWinner closed 1 year ago
1
Score and Hessian (of the likelihood function)

#43 hanbin973 closed 1 year ago
1
Error in handle_design_parameter(design, data, col_data, reference_level) : Too few replicates / too many coefficients to fit model.

#42 sopenaml opened 1 year ago
1
glmGamPoi scales cubically with the number of design matrix columns

#41 frederikziebell opened 1 year ago
5
compare multiple pairs concurrently

#40 pchiang5 opened 1 year ago
2
Error in pseudobulk step

#39 darcymi opened 1 year ago
1
How to do within cluster differential analysis

#38 jianxinwang closed 2 years ago
1
Can't install the package on MacOS Monterey

#37 sjwu571 opened 2 years ago
1
Core Usage

#36 NKalavros opened 2 years ago
1
Too many DEGs?

#35 KunFang93 opened 2 years ago
1
proper input for marker selection

#34 pchiang5 closed 2 years ago
2
test_de failing with on_disk models

#33 NathanSiemers opened 2 years ago
4
Comparison of glmGamPoi models via ANOVA

#32 dg520 closed 2 years ago
0
Design Matrix

#31 akhst7 closed 2 years ago
0
Error parsing "complex" contrast names

#30 TobiTekath closed 2 years ago
2
Adapt test to new SummarizedExperiment() requirement

#29 hpages closed 3 years ago
1
sorry accidentally made this issue.

#28 ceesu closed 3 years ago
0
determining the less trustworthy log2fc values

#27 ceesu opened 3 years ago
4
Design with `NA` values causes nondescriptive error message

#26 lysogeny closed 3 years ago
1
Problem in estimate_betas_fisher_scoring leads to "Error in estimate_overdispersions_fast"

#25 jan-glx closed 3 years ago
10
regarding the "note of caution"

#24 malcook closed 3 years ago
1
pseudobulk_by apparently dropping columns

#23 malcook opened 3 years ago
1
Use for pseudobulk differential expression - advantages & logFC values

#22 Al-Murphy opened 3 years ago
1
Installation of regularization branch

#21 koenvandenberge closed 3 years ago
7
Regression analysis to produce DEGs

#20 Al-Murphy closed 3 years ago
0
Some error messages are unhelpful when truncated

#19 jan-glx closed 3 years ago
2
Small typo "Preprare results"

#18 mikelove closed 3 years ago
1
Return pseudobulk samples values from test_de

#17 Al-Murphy closed 3 years ago
3
Differential Expression case vs control across all cell types

#16 Al-Murphy closed 3 years ago
4
Tests fail on i386 (really i686): ailure: qres.gampoi can handle other weird values (@test-residuals.R#112) `a` is not strictly more than `b`. Difference: 0

#15 mr-c opened 3 years ago
3