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const-ae
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glmGamPoi
Fit Gamma-Poisson Generalized Linear Models Reliably
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Resync with recent developments in SparseArray/DelayedArray packages
#64
hpages
closed
1 month ago
0
Add compute_lfc_se option to test_de
#63
jackkamm
closed
3 months ago
3
results tables identical for all cell populations
#62
lichtobergo
closed
4 months ago
3
glm_gp removes cell type from dataset
#61
pakiessling
closed
4 months ago
4
installation of package ‘glmGamPoi’ had non-zero exit status
#60
NicoHadas
closed
2 months ago
6
Error: 'pseudobulk' is not an exported object from 'namespace:glmGamPoi'
#59
PietropaoliLab
closed
6 months ago
1
[FR] Implement `logLik.glmGamPoi`
#58
jan-glx
opened
7 months ago
2
Unable to install the glmGamPoi package
#57
Kravidc
closed
9 months ago
3
feat: add subsample to loc_median_fit
#56
nlubock
closed
9 months ago
8
small typo
#55
nlubock
closed
10 months ago
1
HDF5Array is not available for package glmGamPoi
#54
nlubock
opened
11 months ago
4
Can you simulate from the fitted model or do you have recommendations for simulation?
#53
carversh
closed
1 year ago
8
Upgrading from beachmat to tatami
#52
LTLA
opened
1 year ago
9
overdispersion_shrinkage is not optional
#51
alexbarrera
closed
1 year ago
3
Standard error of the overdispersion estimates
#50
anglixue
opened
1 year ago
4
compilation error
#49
Jiayi-Wang-Joey
opened
1 year ago
2
Compatibility with R 3
#48
PedroMilanezAlmeida
opened
1 year ago
4
pseudobulk does not include `NA` levels
#47
const-ae
closed
1 year ago
0
Questions about pseudobulk_sce
#46
f6v
closed
1 year ago
3
Inconsistent dispersion estimate between MLE and quasi-MLE
#45
anglixue
closed
1 year ago
1
Typo in help text for overdispersion_shrinkage
#44
DarwinAwardWinner
closed
1 year ago
1
Score and Hessian (of the likelihood function)
#43
hanbin973
closed
1 year ago
1
Error in handle_design_parameter(design, data, col_data, reference_level) : Too few replicates / too many coefficients to fit model.
#42
sopenaml
opened
1 year ago
1
glmGamPoi scales cubically with the number of design matrix columns
#41
frederikziebell
opened
1 year ago
5
compare multiple pairs concurrently
#40
pchiang5
opened
1 year ago
2
Error in pseudobulk step
#39
darcymi
opened
1 year ago
1
How to do within cluster differential analysis
#38
jianxinwang
closed
2 years ago
1
Can't install the package on MacOS Monterey
#37
sjwu571
opened
2 years ago
1
Core Usage
#36
NKalavros
opened
2 years ago
1
Too many DEGs?
#35
KunFang93
opened
2 years ago
1
proper input for marker selection
#34
pchiang5
closed
2 years ago
2
test_de failing with on_disk models
#33
NathanSiemers
opened
2 years ago
4
Comparison of glmGamPoi models via ANOVA
#32
dg520
closed
2 years ago
0
Design Matrix
#31
akhst7
closed
2 years ago
0
Error parsing "complex" contrast names
#30
TobiTekath
closed
2 years ago
2
Adapt test to new SummarizedExperiment() requirement
#29
hpages
closed
3 years ago
1
sorry accidentally made this issue.
#28
ceesu
closed
3 years ago
0
determining the less trustworthy log2fc values
#27
ceesu
opened
3 years ago
4
Design with `NA` values causes nondescriptive error message
#26
lysogeny
closed
3 years ago
1
Problem in estimate_betas_fisher_scoring leads to "Error in estimate_overdispersions_fast"
#25
jan-glx
closed
3 years ago
10
regarding the "note of caution"
#24
malcook
closed
3 years ago
1
pseudobulk_by apparently dropping columns
#23
malcook
opened
3 years ago
1
Use for pseudobulk differential expression - advantages & logFC values
#22
Al-Murphy
opened
3 years ago
1
Installation of regularization branch
#21
koenvandenberge
closed
3 years ago
7
Regression analysis to produce DEGs
#20
Al-Murphy
closed
3 years ago
0
Some error messages are unhelpful when truncated
#19
jan-glx
closed
3 years ago
2
Small typo "Preprare results"
#18
mikelove
closed
3 years ago
1
Return pseudobulk samples values from test_de
#17
Al-Murphy
closed
3 years ago
3
Differential Expression case vs control across all cell types
#16
Al-Murphy
closed
3 years ago
4
Tests fail on i386 (really i686): ailure: qres.gampoi can handle other weird values (@test-residuals.R#112) `a` is not strictly more than `b`. Difference: 0
#15
mr-c
opened
3 years ago
3
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