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Hi, do this riboflow pipeline suitable for paired end data set.
Cheers,
Ranj
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I am having trouble using the read pre-processing commands for reads with UMIs.
I have used the [McGlincy et al 2017](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5582988/) protocol to generate poole…
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Meeting note on Feb 26. 2021
1. DNA footprinting pipeline(shared by Shannon): http://www.regulatory-genomics.org/hint/introduction/
2. DNA footprinting paper (shared by Shannon): https://genomebiolo…
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Via: [riboviz/#29](https://github.com/riboviz/riboviz/issues/29#issuecomment-520508374)
Add the Duncan & Mata 2018 S. pombe dataset to example-datasets.
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This is a tracking issue for all missing or new JBrowse data. I've added what I think are the corresponding issue so I know which is which.
~- Gagneur/Eser #50~
~- variation data (then everythin…
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Allen Buskirk's lab has done ribosome profiling on the themorphilic archaea Haloferax volcanii DS2 ([GSE138990](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE138990)). Adding this dataset mean…
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* pysradb version: pysradb 0.10.5-dev0
* Python version: Python 3.7
* Operating System: Windows 10 Pro 1909
### Description
When I was trying to pipe the output from pysradb search to pysradb …
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User survey
> integrate ribosome profiling data from Mata
>potential uORFs detected/confirmed by mass-spec in ncRNAs)
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Hey, I have two issues with detectRibosomeShifts() function.
the first is the periodicity condition:
validLengths
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```csv
Jordan Berg,@j-berg,0000-0002-5096-0558,jordan.bergbiochem.utah.edu,"bioinformatics, computational biology, network biology, rna-seq analysis, proteomics analysis, metabolomics analysis, ribos…