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Sometimes, not regularly, some analysis are missing reactome_links like the following
[35c9c72e-6848-11ee-9987-4681c6c0c82f](https://dev.reactome.org/GSAServer/0.1/result/35c9c72e-6848-11ee-9987-4681…
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I am working on a project, which include RNA-seq data generated by total RNA library sequencing, with no specific filter for mRNA or enrichment for nascent RNA. Using IGV, my mapping bam files include…
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Hi, I was trying to make the sharkfin plot as you discussed in another [issue](https://github.com/tleonardi/nanocompore/issues/206). However, the shape of my plot doesn't match the shape you showed in…
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First of all, thank you for making these scripts available. This is not really an issue, is more a request for clarification of the tool's output. I am witting here to that others with the same proble…
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[RNA-Seq read representation of the assembly](https://github.com/trinityrnaseq/trinityrnaseq/wiki/RNA-Seq-Read-Representation-by-Trinity-Assembly)
I am following the steps described in the tutorial…
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Hello，
I just used the _Ktrim_ to trim Ribo-seq reads, but i found it did not work. then, I tried _galore_trim_ and _galore_trim_ could trim residual adaptor from the reads.
```
`[ymwang @ ~/linqin…
Ci-TJ updated
4 years ago
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Following up on [the previous issue here](https://github.com/ewels/MultiQC/issues/485)
* **Name of tool:**
* QoRTs
* **Tool description:**
* The QoRTs software package is a fast, efficie…
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Hi,
Has anyone tried CIDR to cluster ChIP-seq data?
Any recommendations on where to start with?
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**# When I run T-DESEQ2 in bulk RNA sequencing analysis.**
treatment_groups=['4-3','4-4']
control_groups=['1--1','1--2']
result=dds.deg_analysis(treatment_groups,control_groups,method='DEseq2')
…
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Hello, first of all thank you for putting this package together. My lab is doing some metagenomics analysis on biological RNA-Sequencing samples and the only negative controls we have are cell line co…