DotKnot is a heuristic method for pseudoknot prediction in a given RNA sequence.
DotKnot extracts stem regions from the secondary structure probability dot plot calculated by RNAfold. Recursive H-typ…
Below, the sum of energy of loops and Minimum Free Energy are different.
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GTfold: A Scalable Multicore Code for RNA Secondary Structure Prediction
(c) 2007-2011 D.A. Bader, S. Mallidi, A. Mathuriy…