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- [ ] check the runinfo to make sure the sample can be combined (i.e. same pairedness, insert size, read length)
- [ ] make sure we don't process the same file twice
- [ ] concatenate output file…
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SRP-dependent cotranslational protein targeting to membrane
has lots of ribosomeal proteins annotated to it by Reactome TAS.
But the ribosome is the target of the targeting pathway
(this …
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Hi, currently the formatting of SPARQL queries aligns predicates/objects based on the length of the subject, e.g.:
```sparql
PREFIX rdfs:
PREFIX skos:
PREFIX up:
SELECT DISTINCT ?diseaseLa…
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I'm running clair3 with the --use_whatshap_for_final_output_haplotagging option (see clair3 command at bottom) on a 1.1TB bam generated on the ONT platform (basecalling and alignment with dorado/minim…
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One NVIDIA A800 80GB
Finetuning Surface Normal Estimation sapiens_1b patch_size = 16
Finetuning Surface Normal Estimation sapiens_2b patch_size = 32 ,because CUDA out of memory for patch_size = 16
…
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Dear Vadim,
I have an issue with the Genes.MaxLFQ in DIA-NN v1.9.
In my data set, the Genes IGHG2 correspond to only one Protein.Group. However, the the quantUTM values for PG.MaxLFQ and Genes.Max…
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R version
4.3.1
packageVersion("clusterProfiler")
‘4.10.1’
get_wp_organisms() gives:
"Caenorhabditis elegans" "Bos taurus" "Arabidopsis thaliana"
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when using resolver.globalnames.org with "Homo sapiens", exact canonical matches include both NCBI:9606 (_Homo sapiens_) and NCBI:741158 (_Homo sapiens ssp. Denisova_). Is this expected?
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### Summary
A user wrote in to the forum regarding running FilterSamReads through GATK and the output bam file has formatting issues. After they sent in a bug report, I found that the exit code is g…
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Hi,
I am trying to use loftee plugin (Grch38) as a part of VEP and I got the following error.
Could you please help?
Thanks in advance
**Command used**
docker run -t -i -v /home/vep_data/:/…