-
I'm having problems with Longshot when running the [Artic pipeline](https://github.com/artic-network/fieldbioinformatics) (even after updating Longshot to v0.4.3, since Artic still uses v0.4.1), in th…
-
From branch 34 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1502
KP.1.1+S:S71Y,S:S31del,
Query: A24819G, del21770_21775, del21653_21655
No of seqs: 59
First: EPI_ISL_190955…
-
Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/656
### **Description**
**Sub-lineage of:** XBB.2.3.3
**Earliest sequence:** 2023-7-30, Netherlands, Noord-Brabant —…
-
Title: Emergence of a novel SARS-CoV-2 strain in Southern California
# General Information
## Please paste a link to the paper or a citation here:
Link: https://www.medrxiv.org/content/10.1…
-
Title: Estimated transmissibility and severity of novel SARS-CoV-2 Variant of Concern 202012/01 in England
# General Information
## Please paste a link to the paper or a citation here:
Link…
-
Hi, our group is using iVar in our ARTIC SARS-CoV-2 workflow. When calling variants, it is listing the deletion at 28,254 with stats that don't match the frequency and POS as -1. See below. What co…
-
Title: SARS-CoV-2 escape in vitro from a highly neutralizing COVID-19 convalescent plasma
# General Information
## Please paste a link to the paper or a citation here:
Link: https://www.bio…
-
Title: Learning the language of viral evolution and escape
# General Information
## Please paste a link to the paper or a citation here:
Link: https://science.sciencemag.org/content/371/652…
-
Proposition of curation of lineage_notes.txt file (formating issues etc... )
[lineage_notes.txt](https://github.com/cov-lineages/pango-designation/files/12599467/lineage_notes.txt)
-
Transferred from sars-cov-2-variants/lineage-proposals#1802
Found with @aviczhl2 's phylogenic tree analysis tool.
Spotted first by @aviczhl2 .
KP.3.1> A1620G(Orf1a:E452G), del29728-29776(#2646…