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Hi
Thanks for your software I do not know why I am not able to merge my metadata
I should mention that my two Bulk samples are output of `micxr` and my two sc(single cell) samples are output of …
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Dear CelliD developers,
I am using CelliD to analyze my own scRNA-seq data from 10X genomics. When running the 'RunCellHGT', I encountered the following errors:
Error in rep(seq(length(PathwayMa…
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## Please use the template below to post a question to https://discourse.scverse.org/c/ecosytem/cell2location/.
### Cell abundance vs cell proportion for calculating spatial maps
I am working …
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Morning 1: Spreadsheets & intro to R
# Good:
## Content:
* Introduction for using function building and using vector
* examples to explain functions
* I always used length() to find out how man…
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Cell by bin
Visualize in higlass
Cell by peaks (in BED + snap files)
Annotated peaks (genomic intervals) per cell
Genome-wide (not necessarily tied to a gene)
Our Pipelines:
- [ ] We need to cre…
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Hi,
Is it possible to run gpsFISH without spatial count and spatial cluster datasets (or can it run with spatial count and cluster datasets provided in the tutorial)? I am working with the datasets…
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Hi,
Thank you all the developers of `scIB` for the great package and also to suggest useful metrics to compare the performance of integration methods.
>WARNING: You may want to skip to the end…
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Hello,
I am attempting to run compute_lineage_drivers(), but no matter what value I set for "lineages" I keep getting a value error.:
```
File "", line 421, in combined_kernel_analysis
File …
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Hi !
I trie to deconvolute and I got this error :
`Error in ST[1, ] : subscript out of bounds`
```
2. SpatialDeconv(ST = st.matrix.data, Ref = Ref, malProp = rep(0, ncol(st.matrix.data…
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Hi,
Thank you for this package. I have been looking for something like this. I tried to use this with my data but I got the following error.
```
Error in rowSums(Ma) : 'x' must be an array of a…