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After fixing issues with the [create_omex](https://github.com/robertvi/SBMLShowcase/blob/2c38d1abe0542196ed51e45f3e1f24b4c73e2e1e/utils/__init__.py#L44) function [#3](https://github.com/robertvi/SBMLS…
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With COR and OpenCell, we can plot simple data, e.g. the L-type calcium current against time. However, we might want to plot the sum of the L-type and T-type calcium currents against time (as I believ…
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Before
```
$ cat ndjson/ice2010_konghau_database_complete_phytoplankton_niskin.ndjson | nd-filter 'd.cells_in_250_ml > 0' | ./iopan_protist_recalc | nd-count --select perfect,volumeRatio,quantity…
cnrdh updated
2 years ago
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Add support to compute values to plot for Math in DataGenerators.
This should also include a special case, simple support for concentration calculation found in SBML testsuite SED-ML.
This should al…
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RepeatedTask allows iteration over a single range (or more specifically simultaneous iteration over multiple ranges).
For example, with three ranges, the equivalent Python code looks roughly like t…
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# Symptoms
Lambdapi raises `assert false` when the `package_path` of the related `lambdapi.pkg` changes and that another file from the same package is imported (from a `lpo`).
# How to reproduce…
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## Requirement Analysis
### mandatory tasks
- graphical user-interface that
- displays all simulation scenarios inside the publications FSKX model archive,
- allows the user to change the paramet…
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= Description =
- Provide metabolic engineering tools in !BioPreDyn API.
= Context =
- !BioPreDyn mainly deals about manipulating biological models and simulations through the Simulation Experiment D…
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I had an issue with a missing keyword: the implementation used `eta` as a variable name, but since it is not declared in `ec_keyword`, EasyCrypt would print a parse error.
I took a look into EasyC…
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To facilitate the use of SED-ML beyond kinetic models encoded in SMBL, I think it would be helpful to add URNs for the SBML-fbc, multi, and qual packages. Because these packages are largely used separ…