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## Expected Behavior
I am running foldmason with the command below:
easy-msa /workspace/protein/structs /workspace/results_foldmason/protein/result /workspace/results_foldmason/protein/tmpFolder -…
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Please be sure to check the Discussions Q&A section before filing a new question.
## Question
How can I debug the function calls made by this sample? If I add breakpoints to the method body of e…
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The following (once reviewed and corrected by more knowledgeable users and/or developers) might be a useful section added to the Darktable user manual at darktable / Lighttable / digital asset managem…
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| Difficulty | Expected Duration | Possible Mentors |
|-|-|-|
| Medium | 175h | @reece |
### Summary
SeqRepo provides a simple interface to biological sequences and subsequences, with a single…
reece updated
1 month ago
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### What version of `drizzle-orm` are you using?
0.32.1
### What version of `drizzle-kit` are you using?
0.23.0
### Describe the Bug
I'm encountering issues with the `drizzle-kit push` command wh…
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Dear , @proteinosome and @fripp
Would it ber possible to upgrade qiime2 to the latest version (2024.5 as I write) and add greengenes2 (q2-greengenes2 and accompanying classifier database) as an a…
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Hi! I had this issue:
```
time VirID assembly_and_basic_annotation -i SRR1007830
5_1.fastq -i2 SRR10078305_2.fastq -out_dir virid_output --threads 24
[2024-10-01 11:41:45] INFO: VirID v3.1.0
[…
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I'm trying to de-duplicate a large sam file (it's ~200GB in size). This tool seems promising (although I'd like to know more about how it handles unpaired reads, which I would still like to use in my …
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Hello, I need the sequence from part of my Blastp hits. The full_sseq option from custom outfmt 6 returns the sequence with variable amino acids.
For example:
MIRSRSRATRGVRMKTFKATMTTAMLALXXXXXXXXXX…
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**Describe the bug**
While running RepeatModeler, I am consistently getting error at the point where the de novo LTR sequences found by LtrRetriever are being aligned with MAFFT. The RepeatScout / Re…