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**Edit**: After evaluating the options outlined below for supporting building block alert suppression the team decided we could utilize this same (new) data structure to also provide a path for config…
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So it appears that guided generation returns the requested structure like json only if the model has an infinite number of tokens it can generate, but otherwise very often it fails to close the struct…
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I pasted this PDB in the pdb file: [6e08.pdb.gz](https://github.com/user-attachments/files/17080143/6e08.pdb.gz)
And this was the email message:
```
Check twice before you click! This email ori…
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Hello,
Our lab currently trying the cDNA-PCR barcoding kit (PCB111.24) for our _de novo_ assembly transcriptome project. Our issue is that after using pychopper, we still somehow have the barcode se…
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I created an Autocomplete Text Window using Node.js and Java, which helps in speeding up typing by suggesting and completing words as you type. When you start typing a word in the main text area, the …
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Feature Description
### **Single Linked List**
A **Single Linked List** is a data structure consisting of n…
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Hi,
I'm new to foldseek and I wonder if you can you provide guidance on how I can obtain structure alignment of a small fragment of a protein. Basically, the protein has a 8-aa forming a beta-hairpin…
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Hi, I have a corpus of about 500,000 protein sequences and would like to apply them to existing models like ESM2 or this one for predicting the fitness effect of changing an amino-acid for another.
H…
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Hello!
I used the training and inference scripts and configurations provided, however, when I analyze my results I see that even that the reference and the mutant structure almost overlap, the sequ…
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### Steps To Reproduce
Running on [SageMathCell](https://sagecell.sagemath.org/?z=eJzz1rOpslOwVfArzU1KLXLLTM1J0aiIM1HQVTC00KqIM1LQVrDU5OXy9waq8dYrysxLj89Pi8_MK0lNTy0q1gBKBQBl_L31MlNSE3M0jIECicXFqUU…