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# Single cell
Single-cell analysis
[https://leequn.github.io/2020-06-19-SingleCell/](https://leequn.github.io/2020-06-19-SingleCell/)
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Dear @sqjin
Thank you for providing this valuable resource.
I have two questions,
Q1.
I want to understand the impact of stroma spots on neighboring cells.
In such cases, is it reasonable t…
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**Text Mining add-on cannot be found in the Add-0n drop down list as shown in the screenshot below**
**Orange version:**
Orange 3.36.2
**Screenshots**
![orange3 36 2](https://github.com/biola…
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Firstly, thank you for putting together such a useful tool!
Apologies in advance if this is a naive issue as I am relatively new to R and scRNAseq analysis. I am trying to use Lamian to compare pse…
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In #2 @hkhawar applied whitening to try to correct for batch effects. This issue will track the experiment/analysis of applying Harmony to the same DMSO profiles in #2
@sMyn42 will apply Harmony t…
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I have an FAQ on using the single cell instance (and, tbh, tutorial mode) I'd like to appear at the beginning of ALL single cell tutorials
Ditto an FAQ on joining the single cell user community to …
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Hello,
Thanks for developing such a great tool. I am using IsoQuant to analyze ONT single-cell full-length transcriptome data and would like to obtain exon count information to calculate PSI. In th…
weib3 updated
1 month ago
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Summarize commonly used QC metrics in Single Cell data analysis
* Method 1
* Method 2
* Method 3
Recommended QC metrics/method for spatially-resolved data.
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Hi,
Thanks for developing this smart tool. I am currently working in a species with a phased genome, which can easily provide haplotype information. We also have enough population genotype data. In …
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Hi,
I am trying to analyze a dataset that includes 10 single cell experiments and about 66,000 cells. The actual set of cells I'm interested in is a small group of those, of about 7,000 cells. Wit…