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Hi :) i get this error and have no idea where it comes from:
`recognizer.py -o /Users/laura/Desktop/try1 -f /Users/laura/Desktop/BIOINFORMATICS/OLD/Newannotations-PDD/508/Complete/QMA0508.fna
Crea…
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After reviewing the data with @andrewhercules we concluded the "Experiments" datasource is missing in the STRING API response.
- [GAPDH interactions in STRING website](https://string-db.org/cgi/net…
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https://mp.weixin.qq.com/s/jW4HC_pemLFVZrqSXUWP_A
ixxmu updated
3 years ago
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Hi, thanks for your amazing work. I found really interesting your publications and I was trying to follow the tutorial in the wiki but I have found an error and I don't know how to continue.
I am …
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Hi Marc,
I am getting an error when running `spotlight_deconvolution()` with your example dataset. More info:
```
[1] "Preparing Gene set"
[1] "Normalizing count matrix"
[1] "Seeding initial …
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Hello!
I have a preprocessed Seurat object that I passed into GenerateEdgeWeights(). Here is my code:
```
populations.use
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Dear Jan,
I had a problem converting the StringDB PPI from matrix to network when following your tutorial on " Integrated network analysis of EGF and IGF stimulation using PHOTON". The Perseus ver…
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Hey,
It would be great if we could provide expression data from columns of the node table of a (STRING) network as input for EM. We often have STRING networks with expression data or if not that, …
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- [X] I read [the conda-forge documentation](https://conda-forge.org/docs/user/introduction.html#how-can-i-install-packages-from-conda-forge) and could not find the solution for my problem there.
…
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Hi,
I've just got `unused argument (.data$species_name == species)` error, and I don't know how to proceed. Is it a bug or am I doing sth wrong?
```
> library(msigdbr)
> msigdbr(species = "Homo s…