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Habe gerade das Paper gefunden: [DeepTCR is a deep learning framework for revealing sequence concepts within T-cell repertoires](https://www.nature.com/articles/s41467-021-21879-w)
Zur Vorverarbeit…
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Hi,
I followed the spatial dm example but I keep getting errors when running spatialdm_local.
Below is the code I am running.
```
start = time.time()
sdm.spatialdm_local(adata, n_perm=1000, m…
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I am attempting to use the BuildDatabaseFa.pl script from Trust4 to analyze T-cell and B-cell receptor sequences in Vicugna pacos (alpaca). I have encountered an error during the script execution, and…
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The `hits[].projects` values in a `/index/{entity_type}` response come from one bundle per hit, and are not an aggregate from all the bundles for a given project.
For example, imagine multiple bund…
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Title: SARS-CoV-2 infects T lymphocytes through its spike protein-mediated membrane fusion
# General Information
## Please paste a link to the paper or a citation here:
Link: https://doi.or…
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Hello,
I'm trying to run Igor on my T cell receptor beta chain sequences, and everything works great until my sample size is above 100,000 sequences.
I'm getting the following error when using -…
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**CL term**
alpha-beta T cell, CL:0000789
**Synonym to be added** (include synonym scope broad/exact/narrow/related and reference(s))
conventional T cell, Tconv
needed for INCLUDE
cc @lopierr…
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We should include both 'naive' and highly mutated datasets, so that the performance of tools can be tested uinder both conditions
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# demo
## MedAL
https://arc.net/l/quote/dizfzncf
> '''
we have taken a basic biologic RPA to elucidate the pathophysiology of BPD bpd the CLD based on cellmolecular mechanisms of physiologic…