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Hello, I encoutered a warning today with this code
interactions = c2c.analysis.SingleCellInteractions(rnaseq_data=rnaseq.to_df().T,
ppi_data=lr_pai…
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Thank you very much for providing cellchat. Below are my codes and files. Could you please help me find out where the problem is? I have been checking for several days and browsing all the comments ab…
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Hi,
I followed the spatial dm example but I keep getting errors when running spatialdm_local.
Below is the code I am running.
```
start = time.time()
sdm.spatialdm_local(adata, n_perm=1000, m…
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Hi all!
I've used CellChat the previous month for an important experiment that needed some revisiting now. While looking at the update I wanted to use some of the new functions available to obtain …
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Hey Denes,
Recently, CellPhoneDB got bumped to v5, and the data is stored here:
https://github.com/ventolab/cellphonedb-data/tree/master
Seems to have changed format from:
https://github.com/s…
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Hi @sqjin
Couple of quick questions.
Do we need to do multiple testing to obtain adjusted pvalues / the p-value reported with cellchat identifications of interactions in the individual dataset…
jv-20 updated
9 months ago
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## Description
I encountered a KeyError when running the statistical analysis method in CellPhoneDB with interaction scoring enabled. I want to gracefully handle missing keys by returning np.nan inst…
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Hi your webserver is down. Can you please fix this?
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The nomenclature used in PMID:9971792 seems to follow Kabat
The TCR information in the paper is
| v.beta | cdr3.beta | j.beta | d.beta | v.alpha | cdr3.alpha | j.alpha |
|…