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Here's a short python program that illustrates the problem:
```python
import tellurium as te
r = te.loada("""
S1 -> S2; k1*S1;
S2 -> S1; k2*S2;
S1 = 5; S2 = 10
k1 = 0.…
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We need a `phrasedml` section in the docs analog to the antimony section:
https://tellurium.readthedocs.io/en/latest/antimony.html#
This will solve also #237
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Every biomodels that uses steady state uses the KISAO term 282 ('KINSOL'), and the checker returns this error:
NotImplementedError: Algorithm substitution for "KINSOL" (http://www.biomodels.net/ki…
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I've had a couple of instances where I have found biologicals on a planet that weren't shown in the potential biologicals list.
In most cases, the reason was that this biological hadn't been logged …
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`Get-AppImage` crawls GitHub URLs every two hours. Some of its findings
```
* [STATIC][BlackMirror][GH] Request to https://api.github.com/repos/sorentycho/blackmirror/releases failed with 404
* [ST…
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This is a great idea, something that may be interesting to integrate into Tellurium.
That said, there are some important details to refine. The functional specification for an API (application prog…
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Would it be possible to expand the examples section in Tellurium documentation with examples on how to model and simulate an oxidoreductase?
Something like the [software in this article](https://aca…
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tellurium seems to require libxml2 and libncurses5, but I can't find this documented anywhere.
It would be helpful to provide installation instructions such as:
```
apt-get install libxml2 libncu…
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There has to be an installable python pip package. Currently it is impossible to create a python `virtualenv` virtual environment which would provide the functionality of sbml2matlab. The reason is th…
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Plugins distributed on PyPI along with roadrunner 1.4.24 for Python 2.7 on Windows does not work. This is especially problematic because we need bifurcation plugin working for paper submission.
Fo…