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Loading the `stitched-full` view in the new spatial transcriptomics project works much better now:
- Loading it from filesystem now takes 127028 ms (~ 2 min), so much better than before.
- Once load…
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I have curated multi-gene displays for all datasets in the following profiles (very few have issues and I am keeping track of them and will create tickets later):
- Adult
- Aging
- Central auditory…
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Related tutorial: https://training.galaxyproject.org/training-material/topics/transcriptomics/tutorials/rna-seq-counts-to-genes/tutorial.html
TLDR: Shared Data link to import files is incorrect, ne…
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Project Title: HDCA project: single cell transcriptomicsProject Short Name: HDCA-Sweden-10xProject UUID: 008e40e8-66ae-43bb-951c-c073a2fa6774Wrangler/s: Zinaida,A,Perova; PI/s: Sten,,Linnarsson; Speci…
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The data types are:
- proteomics
- metabolomics
- transcriptomics
- cohort/clinical
FuqiX updated
2 years ago
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Dear professor,
I am getting this TypeError: unsupported operand type(s) for &: 'str' and 'str' error in the function preprocessing in utils.py on the line 205. I tought that genes_shared should be …
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![Captura de pantalla 2024-04-24 192025](https://github.com/cnio-bu/beyondcell/assets/165064962/44724330-a32a-4c6d-a85c-f4dd68cee0dc)
I am currently using seurat versiobn 4.4.0 , is this the correc…
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**Update metadata:**
https://docs.google.com/spreadsheets/d/1QCeAF4yQG4bhZSGPQwwVBj_XF7ADY_2mK5xivAIfHsc/edit#gid=640974611
**Details (publication, GitHub,...):**
There are a nmber of methods to …
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**Addition of Algorithm:**
My name is Matthew Marino. I am a CFDE GlyGEN summer intern working under Jeet Vora and Rene Ranzinger. I am currently trying to create multiomics workflows starting with…
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In SHACL to be fed into FDPs
Matching use cases
1. Transcriptome
2. Variant & clinical information sources HCP, FEGA-Sweden
3. Public resources linkable to genome+clinical information (drugs, pathwa…
mroos updated
3 months ago