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**Description:**
My name is Matthew Marino. I am a CFDE GlyGEN summer intern working under Jeet Vora and Rene Ranzinger. I am currently trying to create multiomics workflows starting with transcripto…
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Hi yeye,
I am interested in your method CCST. It is a nice method for analyzing spatial transcriptomics!
I tried to cluster DLPFC samples with CCST. I did not find the hyperparameter settings fo…
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Hi, thank you very much for your valuable open source data.
I tried to use the metabolomics matrix provided in the article to reproduce the Sankey diagram of Figure E in F1. At first I took …
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Re: https://github.com/x-atlas-consortia/hs-ontology-api/pull/138
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Recently ingested "HDCA project: single cell transcriptomics" has a wrong number of bundles because of incorrect linking (38 instead of 10). It did not trigger any analysis as is
10x 3' v3 sequenci…
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Hi!
GRNBoost2 produces an error at the very last step. The same happens when I use GENIE3. It seems to be a problem with Dask, however, I could not figure out what is going on.
**The code:**
``…
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Can I use this package to load an anndata object which contains spatial transcriptomics data from the 10x Visium platform?
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Hello,
I have been unable to locate the high-resolution .TIF images for the four samples mentioned in your paper.
The images provided on the following website (https://www.ebi.ac.uk/biostudies/…
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This is a list of tutorials that are missing a workflow, if anybody would like to run this tutorial and extract the workflow from their history afterwards and upload it here, this would be a great hel…
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Hi,
It is a fantastic method for analyzing spatial transcriptomics!
I tried to train ConGI on a workstation with a GPU (RTX A4000) with 16.9 GB VRAM. But I encountered a problem named"cuda out of …