aertslab arboreto issues

aertslab / arboreto

A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.

BSD 3-Clause "New" or "Revised" License

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issues

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grnboost2 TypeError: Must supply at least one delayed object

#42 anna4kaa opened 1 month ago
2
grnboost2 fails on large datasets

#41 dmalzl opened 1 month ago
0
concurrent.futures._base.CancelledError occurred when running grnboost2

#40 YimengQiao opened 3 months ago
0
dask bugfix

#39 gennadyFauna closed 7 months ago
0
TypeError from dask_expr/io/_delayed.py when running `grnboost2`

#38 himoto closed 7 months ago
9
Inference without TF

#37 binonteji opened 1 year ago
1
msgpack.exceptions.ExtraData: unpack(b) received extra data.

#36 GeneVector5 opened 1 year ago
0
Different results with same random seed

#35 divyanshusrivastava opened 1 year ago
1
How to set the number of cores used by GRNboost2

#34 divyanshusrivastava opened 1 year ago
1
requirements.txt is missing from PyPI source tarball

#33 boegel opened 1 year ago
2
Is arboreto applicable to bulk RNA-Seq

#31 ZhangDengwei opened 2 years ago
0
"No dispatch for <class 'dict'>" error

#30 scyrusm closed 3 years ago
1
Why GENIE3/A outperforms GENIE3?

#29 mr-september closed 2 years ago
1
Exception: too many values to unpack (expected 1)

#28 xiatianjihao opened 3 years ago
0
GRNBoost2 not available in R 4.0?

#27 mr-september opened 3 years ago
0
Update algo.py

#26 Ann-Holmes closed 3 years ago
0
GRNboost2 importance vs GENIE3 weights

#25 jfouyang opened 4 years ago
4
Pandas version of as_matrix is deprecated

#24 RRCinci-Lu opened 4 years ago
4
network = grnboost2(.. takes too long. Something wrong?

#23 franciscogrisanti opened 4 years ago
3
load_tf_names command not working

#22 Seandelao opened 4 years ago
1
Ability to run Arboreto using a multiprocessing pool in place of Dask

#21 cflerin closed 4 years ago
1
BUGFIX for sparse expression matrices

#20 redst4r closed 3 years ago
1
Algorithm complexity of GRNBoost2

#19 dweemx opened 5 years ago
0
Fix index error when using from_delayed: see issue 17

#18 opoirion opened 5 years ago
0
from_delayed error when running grnboost2

#17 scastlara opened 5 years ago
0
Error when running GRNBoost2

#16 rjb67 opened 5 years ago
0
Garbage collection issue with GRNBoost2

#15 cflerin opened 5 years ago
2
grnboost2: No result, without error message

#14 ebelingm opened 5 years ago
0
GRNboost worker memory usage

#13 olgabaranov closed 5 years ago
2
Dask error in GRNBoost2

#12 jamesrhowe opened 5 years ago
0
AttributeError

#11 ghost opened 6 years ago
2
RuntimeError

#10 DHelix opened 6 years ago
2
bug in retry mechanism

#9 tmoerman opened 6 years ago
0
error of 'distributed' when running GRNboost on server without internet connection

#8 WeiCSong opened 6 years ago
1
grnboost error

#7 wangjiawen2013 opened 6 years ago
6
remove dependency on distributed

#6 tmoerman opened 6 years ago
0
replace deprecated df.as_matrix() with df.values

#5 tmoerman opened 6 years ago
0
arboreto package available in bioconda

#4 vibbits closed 6 years ago
1
error when running grnboost

#3 dnguyen179 closed 6 years ago
2
Dask error: Too many processors

#2 topherconley closed 6 years ago
2
crashed

#1 mfiers closed 6 years ago
1