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I used below code to generate NMDS plot, but I used here raw OTU count as input.
`prev.ordNMDS_data1 vsd
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RimABID
Project Lead: Rim
Mentor:
Welcome to OL6, Cohort E! This issue will be used to track your project and progress during the program. Please use this checklist over the next few week…
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Library phyoloseq Data= Globalpatterns
` GP = filter_taxa(GlobalPatterns, function(x) sum(x > 3) > (0.2*length(x)), TRUE)`
Define a human versus non-human categorical variable, and add this new vari…
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Hello everybody,
I have a small issue which is probably just a rookie mistake. I have a dataset of vaginal microbiota; Illumina HiSeq sequencing was performed, I have run the Dada2 pipeline, and m…
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Hi I've just updated my R studio and now can't run phyloseq, I've tried reinstalling and get the message package ‘nlme’ is not available (for R version 3.3.1) .
I've checked in my installed packages…
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Project Lead:
- Reina Camacho Toro @camachoreina
- Alexander Martínez Méndez @mxrtinez
Mentor:
- Laura Ación @lauracion
Welcome to OLS-3! This issue will be used to track your proje…
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## Problem
The tool gives superficial lessons on topics despite using the higher levels on the Depth parameter.
It would be nice to get something more in depth/longer lessons on topics without hav…
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## About the author
Hello, my name is Tejas and I am a recently graduated student from the University of Maryland College Park. I finished with degrees in finance, information systems as well as pu…
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Hi Joey,
I generated several ordination plots with different distance methods. However, the plots are all identically. I need this for my master thesis, please **HELP**!!!
Here is the program:
…
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The new version (devel): 1.17.11 of DESeq2 requires cleaner factor levels and creates errors
for older datasets that worked well with phyloseq sample data that were characters that included
commas, …