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Hi,
If i try this with python 3.9.16
### With python-barcode 0140 and Pillow 9.5.0 **=> OK**
```
Python 3.9.16 (main, Jun 30 2023, 08:01:58)
[GCC 8.5.0 20210514 (Red Hat 8.5.0-18)] on linux
…
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Hi ,
I have built a exclusive endogenous viral reference and generated STAR index(similar to custom reference in cell ranger, each fasta sequence has one entry/annotation in GTF ie; each fasta ent…
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Hi,
Thank you for developing this great tool!
I tried AMULET on two of 10x Multiome datasets and found two issues:
1) it labeled most of the Mki67+ cycling cells as multiples, which makes sense bas…
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Read Me branch off the main
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Hi,
First off, thanks for working on such a great tool that has proven useful to so many over the years!
However, I am having an issue when using STARSolo where I get a “Segmentation fault (core…
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Can someone please post the sample .bam file for the velocyto python notebooks for which i can myself generate the loom file.
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Hi there,
May I ask whether I can use TRUST4 on already demultiplexed single cell ONT data (avg Q=15), which is enriched for BCRs and TCRs? If yes, I suppose I need to jump straight to the annotati…
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Hi guys, looking for some help on an issue I cannot seem to solve. I have been following the integration pipeline (https://stuartlab.org/signac/articles/merging) for a set of 19 samples, and am havi…
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### Project short name:
GSE132065_BloodTimeHuman
### Primary Wrangler: @ipediez
Enrique
### Secondary Wrangler:
### Associated files
* Google Drive: https://drive.google.com/drive/folders/1LuId…