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https://mp.weixin.qq.com/s/NTl5EMcjgpSh_afMMHfJ4g
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Hello devs,
The flair toolsuite is very interesting!
I have been testing it on a in house direct rna nanopore dataset.
I did have a question about the `--stringent` argument in the `collapse` s…
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Please provide as much information as you can:
* **Suggested term label:**miRNA base-pairing repressor activity
* OR: miRNA inhibitor activity
* **Definition (free text)** Stops, prevents o…
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First of all, thank you for creating this powerful tool to create/improve the annotation of the species we have data for,
Having said that I would like to report a specific problem that I am facin…
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Hi,
I try to find the TSS with READemption in my RNA-seq, and there is an error. I have install the segemehl 0.2.0 on the PC and add it to the environment path. So could you please help me? Thanks. …
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Hi,
I have 2 Direct RNA ONT libraries and my question is about reads that are not full length: due to the library protocol starting with a dT oligo and many reads not long enough to cover the whole…
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Very excited to try this new methodology as a past fan of SCENIC and CisTopic.
I'm sure you have been busy getting the release and manuscript ready. When you have time might you please provide an m…
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I used slow5tools to convert fast5 to slow5, and then convert back.
When I print
`nanopolish index reads.fq --slow5 signals.blow5`
I found the output xxx.index.readdb, it show that
1 * /h…
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Hi,
I would like to know what expected bam outputs are after a successful run of zUMIs. I have got 4 bam files ending with: ".filtered.tagged.Aligned.out.bam", ".filtered.Aligned.GeneTagged.UBcorr…
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Hello Everyone!
I'm Daniel, a PhD student at [saezlab](https://saezlab.org/). I'm opening this GitHub issue motivated by our recent comparison of cell-cell communication methods[1] as well as disc…