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BrooksLabUCSC
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flair
Full-Length Alternative Isoform analysis of RNA
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How does flair quantification work?
#343
dudududu12138
opened
1 day ago
0
FLAIR plot_isoform_usage transcripts flipped
#342
lilif99
opened
2 days ago
0
Process termination at Step 5/5 in flair correct without error messages
#341
kataksk
opened
3 weeks ago
1
FLAIR missing isoforms
#340
lilif99
opened
1 month ago
1
Collapse step didn't output a gtf file without a reference annotation
#339
dudududu12138
opened
1 month ago
0
ValueError in filter_isoforms_by_proportion_of_gene_expr.py
#338
byee4
opened
1 month ago
0
flair quantify problem error
#337
wdesaintjean
closed
1 week ago
3
flair correct shows FileNotFoundError
#336
guo0814
opened
1 month ago
0
psl_to_sequence command
#335
sparthib
opened
1 month ago
0
Hello, after splitting the BED file by chromosomes, we found that a single chromosome's BED file is 1.03G, which is larger than 1G. Can Flair Collapse currently handle a BED file of 1.03G?
#334
991031liurui
opened
1 month ago
1
The naming of my isoforms is different from what is mentioned in your manual.
#333
gnilihzeux
opened
2 months ago
0
How to concatenate bed files before flair collapse
#332
chenxing-zhang
opened
2 months ago
2
allow flair correct to specify temporary directory
#331
diekhans
opened
2 months ago
1
Incorrectly name flair align options is confusing
#330
diekhans
opened
2 months ago
0
How to count the isoforms corresponding to each gene.
#329
anxuan-web
closed
4 months ago
2
flair collapse--NameError: name 'blockcount' is not defined
#328
ChenOreo
closed
4 months ago
4
Flair collapse issue
#327
TTT16
closed
3 months ago
13
add --split-prefix to collapse minimap command
#326
Jeltje
opened
4 months ago
0
fix #180, thanks Colette
#325
Jeltje
closed
4 months ago
0
error in flair quantify
#324
jakobht96
closed
4 months ago
9
Gene model naming issue
#323
sagnikbanerjee15
opened
4 months ago
1
Crash running flair collapse
#322
mbkodos
opened
4 months ago
8
Set isoform abundance cutoff to FLAIR quantify
#321
ulbivin
opened
4 months ago
1
A question about correct model
#320
anxuan-web
opened
5 months ago
4
fixed #318; updated faq
#319
Jeltje
closed
5 months ago
0
Flair quantify error message bug
#318
Chemical118
closed
5 months ago
1
ITD detection?
#316
itslittman
opened
6 months ago
12
Not full length transcript
#315
yycc9897
closed
5 months ago
2
Running collapse_isoforms_precise.py in a main entry point
#314
andyjslee
closed
6 months ago
2
merging code of conduct and discussion
#313
Jeltje
closed
6 months ago
0
Flair collapse stuck at "renaming isoforms using gtf" without error
#311
dmanahan1
closed
5 months ago
3
diffSplice : No such file or directory: 'call_diffsplice_events.py'
#309
CorentinAube
closed
5 months ago
1
Running Flair with multiple samples and replicates
#308
benpiticaru
closed
5 months ago
1
diffSplice files are empty
#307
ghofrankothoum
closed
5 months ago
1
FLAIR could improve alignments by passing minimap2 splice junctions
#306
diekhans
opened
8 months ago
3
Unexpected entries in gtf file after flair collapse
#305
juanfraitu1
closed
7 months ago
1
Issues implementing FLAIR2
#304
Max-Tomlinson
closed
6 months ago
1
Question regarding sequencing depth and collapse step
#303
wuy24
closed
6 months ago
1
Transcript read number
#302
seongwoohan
closed
9 months ago
0
equal with base
#301
Jeltje
closed
9 months ago
0
Refactor
#300
Jeltje
closed
9 months ago
0
Translate predictProductivity output to protein
#299
andreas-wilm
closed
8 months ago
4
Make FLAIR source & packaging structure not weird
#298
diekhans
opened
9 months ago
0
readthedocs change
#297
Jeltje
closed
9 months ago
0
MarkD updates for py3.11 and some code cleanup
#296
Jeltje
closed
9 months ago
0
work around for python 3.11 and a few other things
#295
diekhans
closed
9 months ago
0
Improve documentation of algorithm is readthedocs
#294
diekhans
opened
10 months ago
0
flair correct doesn't exit non-zero when an invalid argument is supplied
#293
diekhans
opened
10 months ago
3
Refactor branch with fixes for #290 and #291
#292
Jeltje
closed
10 months ago
0
ssUtils.py gtfToSSBed crashes if gtf doesn't have transcript_id
#291
diekhans
closed
10 months ago
1
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