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Hello,
Great tool I am trying with the v6 version of VCF( ftp://ftp-mouse.sanger.ac.uk/REL-1807-SNPs_Indels/mgp.v6.merged.norm.snp.indels.sfiltered.vcf.gz ) because of desired genome its not present …
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Hi
I am analyzing quite a lot of DIA data using DIA-NN. For the most runs I have processed, it takes about 40-60 mins but there are few runs that took longer around 200 mins. The .dia file sizes are…
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I am trying to run a de novo assembly using this command
`./Trinity --seqType fq --max_memory 30G --CPU 16 --single ./../../Data/PER71_trans/PRJNA514399/single_end_unstranded.fq.gz`
single_end_u…
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It seems like we need equivariance (combined with attention) for alphafold2, so I am currently working on getting this and https://github.com/lucidrains/se3-transformer-pytorch ready. This is in prepa…
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Dear Trinity team,
I tried running Trinity with"--single" from command line under Ubuntu 14.04 :
**../../Trinity --seqType fq --max_memory 200G --single group4_forward_paired.fastq.gz,group4_forward_…
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Hi again!
For the myeloid samples we have a default genepanel named "The Panel", can we remove this and replace it with our actual in silico genepanel we are using for the myeloid samples, called …
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When I am running Philosopher (version 3.4.13) on a set of TMT10-MS3 samples, I am reaching the "label-free quantification step" and experiencing the following error message:
```
...
time="10:23:…
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I'm proactively adding an issue for scheduling time/date for the session on neurolib.
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Dear all,
I sequenced the v3v4 region of 16s. I have some sequences which are shorter than 400 bp after merging. Would you recommend to remove those short sequences and at which length would you ma…
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Following up with an issue from last week. Ran
```./load_data.py ~/Documents/Seqr_SV/cmg_main_output_2021_01_08_StrVCTVRE_fixedColumns_fixedSampleNames.bed --in-silico ~/Documents/Seqr_SV/cmg_main_o…