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Hello,
I have a question regarding the output from running amrfinder. One of the columns looks something like "+:136". Is this the score for the input region? Also, what does the +/- denote? Thanks…
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There is several tutorials that would need some ❤️
Most of the changes are newcomer-friendly 😄
We created a checklist of the possible contributions on the tutorials: https://galaxyproject.github…
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Hello, It's a wonderful and user-friendly tool for methylation detection.
Here is an issue when applying the alignment step.
```bash
---------------------
Found BWA MEM2 index
running: /dshare/ho…
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Hi,
I am trying to analyse a megalodon output bam file using your python package. I am able to correctly generate the qc report using the `qc_report` function, but when I try to use `plot_enrichmen…
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How do I activate define the GPU for read mapping?
I did go though the working example and used nvidia-smi to monitor any potential activity on the GPU: I could not find any.
For the gem3-mapper I…
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Hi, I have a few questions regarding the use of modkit validate.
1) Can you please demonstrate an example of a ground truth bed file required for modkit validate? If I am trying to evaluate 5mC, shou…
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9de029f9d00e2957e001042724053c9fbbfbe400
[Progress Report](https://github.com/STAT540-UBC/team_Undecided/blob/master/progress_report.md)
@ppavlidis @singha53 @farnushfarhadi @santina
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I was just browsing this repository when looking for good way to plot methylation data, and I read this sentence:
> For non-commercial Academic and Research purpose only!
This is **not** compat…
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### Data Owner Name
ENCODE Data Coordinating Center
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
### Website
https://www.encodeproject.org/
###…
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Hi,
I'm seeing my BScall report.
Below stats are what we got from the report.
I used IHEC standard configuration for analysis.
Type #reads %
Total 1329357671 100%
Mapped 1323152968 99.…