streetslab dimelo issues

streetslab / dimelo

python package for analysis of dimelo-seq & nanopore modified base data

MIT License

3 stars 4 forks source link

issues

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Sudden sqlite3 error

#108 mmahlke closed 1 month ago
0
Update colab tutorial

#107 thekugelmeister closed 2 months ago
0
Update GitHub actions

#106 thekugelmeister closed 3 months ago
1
DM-71,DM-75 Merging in single read compression and some test updates

#105 OberonDixon closed 4 months ago
0
DM-119,DM-120,DM-49 Faster read, write operations. Better single read file integrity test. Should pass all tests.

#104 OberonDixon closed 4 months ago
0
Modkit parsing run tests

#103 OberonDixon closed 4 months ago
0
Modkit parsing run tests

#102 OberonDixon closed 4 months ago
0
Should now pass all tests

#101 OberonDixon closed 4 months ago
0
DM-117, DM-100 further updates to test matrix to cover high methylati…

#100 OberonDixon closed 4 months ago
0
DM-100 Adjust test data so that single read checking is looking at a …

#99 OberonDixon closed 4 months ago
0
DM-117 This should pass all test except the extract hdf5 file comparisons in TestParseBam::extract, which should fail because the format for hdf5 files has been updated

#98 OberonDixon closed 4 months ago
0
DM-49 Implemented working conda build and pytest run for ubuntu and macos. Only runs on modkit_parsing_run_tests branch

#97 OberonDixon closed 4 months ago
0
New comments on cores=1 parameter to resolve memory issues.

#96 OberonDixon closed 4 months ago
0
Modkit parsing beta

#95 OberonDixon closed 4 months ago
0
Modkit parsing oberon

#94 OberonDixon closed 4 months ago
0
dependencies change

#93 OberonDixon closed 4 months ago
0
Modkit parsing oberon

#92 OberonDixon closed 4 months ago
0
Modkit parsing beta

#91 OberonDixon closed 4 months ago
0
Clarifications regarding Windows compatibility.

#90 OberonDixon closed 4 months ago
0
Changed ipywidgets version from 7.7.1 to 7.6.5 because 7.6.5 works on…

#89 OberonDixon closed 4 months ago
0
Modkit parsing oberon

#88 OberonDixon closed 4 months ago
0
Fixed regions=None bug. Clarified setup.py package version info.

#87 OberonDixon closed 4 months ago
0
DM-65 Tweaks to Colab setup in tutorial that should make progress bar…

#86 OberonDixon closed 4 months ago
0
DM-65 Simplified tqdm importing.

#85 OberonDixon closed 4 months ago
0
DM-65 Fixed mistake in utils.import_tqdm that made Colab import the J…

#84 OberonDixon closed 4 months ago
0
Modkit parsing oberon

#83 OberonDixon closed 4 months ago
0
Modkit parsing beta

#82 OberonDixon closed 4 months ago
0
Modkit parsing oberon

#81 OberonDixon closed 4 months ago
0
Modkit parsing oberon

#80 OberonDixon closed 5 months ago
0
Modkit parsing oberon

#79 OberonDixon closed 5 months ago
0
Merge pull request #77 from streetslab/modkit_parsing_oberon

#78 OberonDixon closed 5 months ago
0
Modkit parsing oberon

#77 OberonDixon closed 5 months ago
0
Modkit parsing beta - bring in readme changes

#76 OberonDixon closed 5 months ago
0
Modkit parsing main

#75 OberonDixon closed 5 months ago
0
Modkit parsing oberon

#74 OberonDixon closed 5 months ago
0
Modkit parsing main

#73 OberonDixon closed 5 months ago
0
Modkit parsing oberon

#72 OberonDixon closed 5 months ago
0
Modkit parsing oberon

#71 OberonDixon closed 5 months ago
0
Modkit parsing main

#70 OberonDixon closed 5 months ago
0
fixing variable name in region specifier

#69 thekugelmeister closed 5 months ago
0
Deleted dimelo_old folder to clean up workspace.

#68 OberonDixon closed 5 months ago
0
Modkit parsing oberon

#67 OberonDixon closed 5 months ago
0
Modkit parsing oberon

#66 OberonDixon closed 5 months ago
0
Modkit parsing main

#65 OberonDixon closed 5 months ago
0
Modkit parsing oberon

#64 OberonDixon closed 5 months ago
0
Tutorial updates

#63 thekugelmeister closed 5 months ago
0
Modkit parsing oberon

#62 OberonDixon closed 5 months ago
0
Modkit parsing main

#61 OberonDixon closed 5 months ago
0
Updating docs; some consolidation

#60 thekugelmeister closed 5 months ago
0
Merge README changes from main

#59 OberonDixon closed 5 months ago
0