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streetslab
/
dimelo
python package for analysis of dimelo-seq & nanopore modified base data
MIT License
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Merge into main
#58
OberonDixon
closed
6 months ago
0
Merge main into oberon
#57
OberonDixon
closed
6 months ago
0
Improved docs and method names
#56
thekugelmeister
closed
6 months ago
0
New structure, naming conventions, bug fixes
#55
OberonDixon
closed
6 months ago
0
Bringing in import restructuring, function name changes, etc
#54
OberonDixon
closed
6 months ago
0
Reconciling recent changes
#53
OberonDixon
closed
6 months ago
0
Bringing in a bunch of changes on multiplatform support and package structure
#52
OberonDixon
closed
6 months ago
0
Bringing in a bunch of changes on multiplatform support and package structure
#51
OberonDixon
closed
6 months ago
0
Savio and M1 mac local operation, moved notebooks
#50
OberonDixon
closed
6 months ago
0
Modkit parsing oberon
#49
OberonDixon
closed
6 months ago
1
plot_enrichment with real data
#48
thekugelmeister
closed
6 months ago
0
Temporary config for running on multiple platforms
#47
thekugelmeister
closed
6 months ago
0
Single read initial work. Processing for old CTCF file.
#46
OberonDixon
closed
6 months ago
0
Commentary, test_data tweaks, and smoothing
#45
thekugelmeister
closed
6 months ago
0
Pulling in the enrichment profile end to end prototype
#44
OberonDixon
closed
6 months ago
0
Modkit parsing main
#43
OberonDixon
closed
6 months ago
0
added documentation
#42
thekugelmeister
closed
6 months ago
0
adding prototype interfaces
#41
thekugelmeister
closed
6 months ago
0
ValueError: The palette dictionary is missing keys: {'A+a.', 'C+m.'}
#40
yxu405
opened
8 months ago
1
pytest warnings
#39
OberonDixon
opened
1 year ago
0
Setting threshA/C = 0 in dm.plot_enrichment_profile() function plots fluctuations instead of flat lines
#38
MichalRozenwald
closed
5 months ago
1
Chromosome number in `methylationAggregate_` table
#37
palakela
opened
1 year ago
1
Builds failing due to `black` formatting
#36
thekugelmeister
opened
1 year ago
0
OperationalError: database is locked when using `plot_enrichment` functions
#35
palakela
opened
1 year ago
3
Problem getting methylation by base data in non chromosome X and Y from diploid bam
#34
yxu405
closed
1 year ago
6
Update Mm/Ml tag name handling to meet the SAM spec
#33
thekugelmeister
opened
1 year ago
2
Check for out-of-bounds bases specified in MM/ML tags
#32
thekugelmeister
opened
1 year ago
2
Cli doc
#31
thekugelmeister
closed
2 years ago
0
sqlite3 transaction error when running qc_report
#30
reetm09
opened
2 years ago
0
Cleanup
#29
amaslan
closed
2 years ago
1
Dblock
#28
reetm09
closed
2 years ago
2
New unit tests
#27
thekugelmeister
closed
2 years ago
6
parse_bam progress bar
#26
thekugelmeister
closed
2 years ago
1
GitHub actions build
#25
thekugelmeister
closed
2 years ago
0
Demo
#24
amaslan
closed
2 years ago
0
Doc fixes
#23
amaslan
closed
2 years ago
0
Documenation
#22
amaslan
closed
2 years ago
0
Fixing failing build
#21
thekugelmeister
closed
2 years ago
4
Command Line Interfaces
#20
thekugelmeister
closed
2 years ago
0
Gh pages link
#19
amaslan
closed
2 years ago
0
Minor fixes
#18
amaslan
closed
2 years ago
0
Warning fixes
#17
amaslan
closed
2 years ago
0
Add testing for parse_bam
#16
thekugelmeister
closed
2 years ago
0
parse_bam cleanup
#15
thekugelmeister
closed
2 years ago
0
Gallery
#14
reetm09
closed
2 years ago
0
Cleanup
#13
amaslan
closed
2 years ago
0
(parse_bam) AttributeError: 'str' object has no attribute 'chromosome'
#12
thekugelmeister
closed
2 years ago
2
(parse_bam) UnboundLocalError: local variable 'windows' referenced before assignment
#11
thekugelmeister
closed
2 years ago
3
plot_browser pandas view-versus-copy warning
#10
thekugelmeister
closed
2 years ago
1
parse_bam return examples break as-is
#9
thekugelmeister
closed
2 years ago
3
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