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streetslab
/
dimelo
python package for analysis of dimelo-seq & nanopore modified base data
MIT License
3
stars
5
forks
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Error compiling Cython file
#110
jemoore16
opened
3 weeks ago
0
Issue when running plot_browser
#109
mmahlke
closed
1 month ago
3
Sudden sqlite3 error
#108
mmahlke
closed
4 months ago
0
Update colab tutorial
#107
thekugelmeister
closed
6 months ago
0
Update GitHub actions
#106
thekugelmeister
closed
6 months ago
1
DM-71,DM-75 Merging in single read compression and some test updates
#105
OberonDixon
closed
7 months ago
0
DM-119,DM-120,DM-49 Faster read, write operations. Better single read file integrity test. Should pass all tests.
#104
OberonDixon
closed
7 months ago
0
Modkit parsing run tests
#103
OberonDixon
closed
7 months ago
0
Modkit parsing run tests
#102
OberonDixon
closed
7 months ago
0
Should now pass all tests
#101
OberonDixon
closed
7 months ago
0
DM-117, DM-100 further updates to test matrix to cover high methylati…
#100
OberonDixon
closed
7 months ago
0
DM-100 Adjust test data so that single read checking is looking at a …
#99
OberonDixon
closed
7 months ago
0
DM-117 This should pass all test except the extract hdf5 file comparisons in TestParseBam::extract, which should fail because the format for hdf5 files has been updated
#98
OberonDixon
closed
7 months ago
0
DM-49 Implemented working conda build and pytest run for ubuntu and macos. Only runs on modkit_parsing_run_tests branch
#97
OberonDixon
closed
7 months ago
0
New comments on cores=1 parameter to resolve memory issues.
#96
OberonDixon
closed
7 months ago
0
Modkit parsing beta
#95
OberonDixon
closed
8 months ago
0
Modkit parsing oberon
#94
OberonDixon
closed
8 months ago
0
dependencies change
#93
OberonDixon
closed
8 months ago
0
Modkit parsing oberon
#92
OberonDixon
closed
8 months ago
0
Modkit parsing beta
#91
OberonDixon
closed
8 months ago
0
Clarifications regarding Windows compatibility.
#90
OberonDixon
closed
8 months ago
0
Changed ipywidgets version from 7.7.1 to 7.6.5 because 7.6.5 works on…
#89
OberonDixon
closed
8 months ago
0
Modkit parsing oberon
#88
OberonDixon
closed
8 months ago
0
Fixed regions=None bug. Clarified setup.py package version info.
#87
OberonDixon
closed
8 months ago
0
DM-65 Tweaks to Colab setup in tutorial that should make progress bar…
#86
OberonDixon
closed
8 months ago
0
DM-65 Simplified tqdm importing.
#85
OberonDixon
closed
8 months ago
0
DM-65 Fixed mistake in utils.import_tqdm that made Colab import the J…
#84
OberonDixon
closed
8 months ago
0
Modkit parsing oberon
#83
OberonDixon
closed
8 months ago
0
Modkit parsing beta
#82
OberonDixon
closed
8 months ago
0
Modkit parsing oberon
#81
OberonDixon
closed
8 months ago
0
Modkit parsing oberon
#80
OberonDixon
closed
8 months ago
0
Modkit parsing oberon
#79
OberonDixon
closed
8 months ago
0
Merge pull request #77 from streetslab/modkit_parsing_oberon
#78
OberonDixon
closed
8 months ago
0
Modkit parsing oberon
#77
OberonDixon
closed
8 months ago
0
Modkit parsing beta - bring in readme changes
#76
OberonDixon
closed
8 months ago
0
Modkit parsing main
#75
OberonDixon
closed
8 months ago
0
Modkit parsing oberon
#74
OberonDixon
closed
8 months ago
0
Modkit parsing main
#73
OberonDixon
closed
8 months ago
0
Modkit parsing oberon
#72
OberonDixon
closed
8 months ago
0
Modkit parsing oberon
#71
OberonDixon
closed
8 months ago
0
Modkit parsing main
#70
OberonDixon
closed
8 months ago
0
fixing variable name in region specifier
#69
thekugelmeister
closed
8 months ago
0
Deleted dimelo_old folder to clean up workspace.
#68
OberonDixon
closed
8 months ago
0
Modkit parsing oberon
#67
OberonDixon
closed
8 months ago
0
Modkit parsing oberon
#66
OberonDixon
closed
8 months ago
0
Modkit parsing main
#65
OberonDixon
closed
8 months ago
0
Modkit parsing oberon
#64
OberonDixon
closed
8 months ago
0
Tutorial updates
#63
thekugelmeister
closed
8 months ago
0
Modkit parsing oberon
#62
OberonDixon
closed
8 months ago
0
Modkit parsing main
#61
OberonDixon
closed
8 months ago
0
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