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How can I adjust minigraph parameters within the cactus-pangenome pipeline?
I am seeing reduced performance of giraffe (with clipped graph) compared to mapping to a linear reference. I think it's …
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Hi
many thanks to you for this tool and maintaining it.
Please I need your help to resolve these issues.
I downloaded the pre-compiled binaries for Linux for the latest release [Cactus 2.6.8 20…
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I want to get the **bam file** from **gam file** using command:`vg surject -b -t 20 -p GRCh38#0#chr21 -x ../chr21.gfa graphaligner_aln_new.gam > aln.bam`,but there is a stack smashing detected error.
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(Part of review thread https://github.com/openjournals/joss-reviews/issues/6062)
Overall, the paper reads well, and I am convinced of your pipeline's value both in terms of
need for the community…
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I just learned about the human pangenome project (https://humanpangenome.org/). Currently we are mapping the proteins to the Ensembl Gene. Is it worth thinking about about mapping to the PanGenome? Is…
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Hi
I'm trying to run partition-before-pggb with latest 0.5.4 build on Docker.
I appears the build is pointing to the wrong location for scripts.
I get this error:
```
srun -n 1 singularit…
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Hello,
I am currently using odgi -viz to produce graphs and I don't understand how to compact my graph path names.
Currently when I run it through cactus-pangenome, the graph only has the name…
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### Data Owner Name
Human Pangenome Reference Consortium
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
### Website
https://humanpangenome.org/
#…
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**Description**
Good morning!
I've been using Bactopia without problems this past month for assembling, ask-merlin module, abricate module and pangenome wf. My problem appeared when trying to u…
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### Data Owner Name
Human Pangenome Reference Consortium
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
### Website
https://humanpangenome.org/
#…