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Hi, I have a simple questions about rank acceleration. Is `abs` just changing the sign? If yes, Why is `BIK` ahead of `S100A6` in column 1 of `rank_abs_acceleration` as follows:
```python
adata.uns[…
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I think you could use some simple slides during the intro rather than lingering on the text at the beginning of the notebook since you spend quite a bit of time talking there.
There is some freezin…
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Hello,
How do I see Leiden clusters on my sam output? I ran the sam algorithm on my HSC clusters and got the below output. I cannot perform the Leiden algorithm with scanpy since it does not store…
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I am attempting to replicate the UMAP projection show in Figure 1b of Stephenson et al. (2021).
The data I am using is imported from 'covid_portal_210320_with_raw.h5ad' (I believe 'haniffa21.proces…
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Hi
I just found your software and I am so intrested in using that for my 10x 5 GEX'+TCR+BCR data
I have TCR and BCR for two healthy PBMC
I have attached TCR and BCR for one sample here
I …
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Hi Michael!
Could you add some comments and reasoning why `betweenLaneNormalization` was used in your code when running RUVSeq ? In particular, I am wondering:
1. What is the general rationale, wh…
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### OVERVIEW
[GeneCloudOmics](http://combio-sifbi.org/GeneCloudOmics/) GeneCloudOmics an easy-to-use web server for high-throughput gene expression analysis a comprehensive range of data analytics to…
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Hello.
I am RUNing a Docker container of Asc Seurat.
When I try to run the sample data, I get an error.
I have not changed any values in the GUI.
The place where the error occurs is in the cluster…
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I've done the tutorial on scRNA-seq integration (https://satijalab.org/seurat/articles/integration_introduction.html) using Seurat 4.1.1. Could someone please explain to me why seurat_clusters and seu…
yjlui updated
2 years ago
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https://mp.weixin.qq.com/s/VWfMo_FGNkolKSHNC8a6IQ
ixxmu updated
2 years ago