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alexyermanos
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Platypus
R package for the analysis of single-cell immune repertoires
GNU General Public License v3.0
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VDJ_GEX_matrix wrapper error
#69
aherman-umn
opened
3 months ago
0
Add website to Description
#68
olivroy
opened
4 months ago
0
Github version installation error
#67
jaymm-lee
opened
5 months ago
1
Platypus minimal
#66
tudorcotet
closed
7 months ago
0
minor changes
#65
anamaysamant
closed
7 months ago
0
Delete Platypus_3.4.1.tar.gz
#64
tudorcotet
closed
9 months ago
0
VDJ_GEX_matrix ERROR
#63
Yvonne-Yue
opened
10 months ago
0
Can't install Platypus
#62
Masakazu-Ishikawa137
closed
10 months ago
2
VDJ_GEX_overlay_clones highlighted cells don't match with clonotype frequency in GEX
#61
jianwu1
opened
11 months ago
0
Duplicated code causing a bug in VGM_integrate
#60
jianwu1
opened
11 months ago
0
VDJ_GEX_matrix removes the embeddings for cells without VDJ information
#59
jianwu1
opened
12 months ago
0
VDJ_call_MIXCR not working because "Require tsv file type, got tempmixcrlc.out.vdjca" in "system(paste0(custom.cmd.call, " ", mixcr.directory,"/mixcr.jar exportAlignments --preset full -descrsR1 -vAlignment -dAlignment -jAlignment -aaMutations VRegion -aaMutations JRegion -nMutations VRegion -nMutations JRegion tempmixcrlc.out.vdjca tempmixcrlc.out.tsv",sep=""))"
#58
jianwu1
opened
12 months ago
3
what is clonal rank in VDJ_clonal_expansion
#57
jianwu1
closed
12 months ago
0
VDJ_diversity grouping.column doesn't accept seurat_clusters as a factor
#56
jianwu1
opened
1 year ago
0
Error in VDJ.proc$Nr_of_VJ_chains == 0 && VDJ.proc$Nr_of_VDJ_chains == : 'length = 1832' in coercion to 'logical(1)'
#55
jianwu1
closed
1 year ago
0
Rphenograph implementation using the vgm[["GEX"]] matrix
#54
zoqaiyum
closed
1 year ago
1
Error in PlatypusDB_find_CDR3s function
#53
beginner984
opened
1 year ago
1
Visualizing GSEA results
#52
MaryGoAround
opened
1 year ago
0
AntibodyForest_network_to_pnp update
#51
DLaurencik
closed
1 year ago
0
Platypus DB not accessible
#50
joegeorgeson
opened
1 year ago
0
Error in assign(mname, def, where) : cannot add bindings to a locked environment
#49
mahlaranjeet
opened
1 year ago
2
Data upload trouble
#48
martuskaR
opened
1 year ago
3
Adding GEX to VGM created with AIRR_to_VGM
#47
kbruton
opened
1 year ago
1
Printing the summary table of overlapping clones from the VDJ_overlap_heatmap() function
#46
zoqaiyum
closed
1 year ago
1
VDJ_available does not show up for 18 out of my 19 samples
#45
zoqaiyum
opened
1 year ago
3
Creating sequence logo graphs for each samples using VDJ_logoplot_vector
#44
zoqaiyum
closed
1 year ago
1
Modifying VDJ_VJ_usage_circos for groups of samples+other questions
#43
zoqaiyum
opened
1 year ago
2
Loading GEX failed from 'VDJ_GEX_matrix' function
#42
LBH2021
closed
1 year ago
1
Changing colour scheme to analyze VDJ
#41
zoqaiyum
opened
1 year ago
2
Loading VDJ failed invalid subscript type 'list'`
#40
SamS0218
opened
1 year ago
4
Assigning characteristics to samples in vgm
#39
zoqaiyum
closed
1 year ago
1
question about Input format
#38
wajm
closed
1 year ago
0
VDJ_call_MIXCR issue
#37
kbruton
closed
1 year ago
2
Database lookup not working
#36
LBH2021
closed
1 year ago
1
VDJ_Dynamics not recognizing feature column
#35
LBH2021
closed
1 year ago
1
how to add both vdj_B and vdj_T same time
#34
Lei-GitHub
closed
1 year ago
1
dummy VDJ
#33
ChrisOmics
closed
1 year ago
1
Getting intuition
#32
MaryGoAround
closed
1 year ago
1
Error in ggiNEXT.iNEXT of Immune receptor repertoire diversity vignette
#31
QianhuiXu
closed
1 year ago
1
Help and idea
#30
Mussa1122
closed
1 year ago
1
CITE-Seq integration
#29
sraju89
closed
1 year ago
1
antibody forests for sparse data
#28
EdGreen21
closed
1 year ago
1
Errors running antibody forests vignette
#27
duinsel
closed
1 year ago
2
how to integrate the seurat analysis GEX results to Platypus
#26
songeric1107
closed
1 year ago
1
Visualising Clonal Frequencies Using Donut Plots
#25
beginner984
closed
1 year ago
0
VDJ_available not found in all samples
#24
Andy-ChanKP
closed
1 year ago
8
Error in the function VDJ_call_MIXCR
#23
Andy-ChanKP
closed
1 year ago
3
Error in VDJ_clonal_expansion
#22
meaksu
closed
1 year ago
5
Error in VDJ_clonotype
#21
meaksu
closed
1 year ago
8
VDJ_clonotype errors using vignette
#20
scas224
closed
1 year ago
3
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