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Good day, colleagues,
I have a question regarding the search for several RNA modifications, including:
- N6-methyladenosine (m6A)
- pseudouridine (Y)
- 5-methylcytosine (m5C)
- 5-hydroxymeth…
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I really enjoy using your loom viewer and have had great success visualizing .loom files generated from SCENIC runs.
I'm trying to visualize a data set analyzed completely in Seurat and visualize …
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It seems that in AptaCluster, you are performing clustering with the entire DNA sequences. In RNA aptamers, the DNA sequences contains T7 promoter which will not appear in RNA aptamer molecules. So I …
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Related to a bullet point from [this comment](https://github.com/AlexsLemonade/training-modules/issues/240#issue-647525460) on the potential bulk RNA-seq changes inspired by 2020 May and 2020 June tra…
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I am getting an error running the rnascope_mouse function at line 56. Another labmate of mine downloaded this 3 weeks ago and is not having this error. I noticed the latest commit was 6 days ago- has …
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Hi,
I am trying to develop a pipeline including your RNA Editor in it. However, when I try to use it, I run into an error. The software quits when it is at the indexing bam file step.
I have tri…
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As a data steward responsible for managing and preserving of data generated in my lab, I want ensure raw data generated by a sequencing experiment (gzipped FastQ files, typically few GB per sample) is…
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hello,
Thank you for this package! Is there a way to extract the original cells for both the RNA and ATAC-seq that were used to make the pseudomultiome and map those to the cells for the output mat…
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Hi, I have some unpaired scRNA-seq and scATAC-seq data, they are sequencing the same samples, but in separate scRNA-seq and scATAC-seq assays, so the cell barcodes are different in these datasets. How…