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Hello dear Seurat developers,
I have been using Seurat for a while now analyzing scRNA-seq data, and wanted to try out some spatial analysis to familiarize myself with that topic of transcriptomics…
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https://mp.weixin.qq.com/s/Sw1QQKRLp_RtUb4Y8q4Z8Q
ixxmu updated
3 months ago
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The issues for anvil8 have been addressed and the [TDR Datasets and snapshots](https://docs.google.com/spreadsheets/d/1yYiB3TrX0wvLCHvtWY1GTZZcAf5MmMREgn52OKCHsqs/edit?usp=sharing) spreadsheet has bee…
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https://mp.weixin.qq.com/s/9NypJ_tZMOgxobqg5N26Ww
ixxmu updated
2 months ago
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Using v1.5.0 - Extracting the single cell info reads step fails on the Github example data in the documentation.
```
python ${path}/src/Monopogen.py somatic \
-a ${path}/apps -r region…
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Hello,
I am a new Seurat user and attempting to apply the workflow from the "Introduction to scRNA-seq integration" vignette to my own data (https://satijalab.org/seurat/articles/integration_intro…
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https://mp.weixin.qq.com/s/xVZWyxra55Kx0NNWBAVfyg
ixxmu updated
1 month ago
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https://mp.weixin.qq.com/s/0YTC6SBoMolBEu7GZsBXAA
ixxmu updated
1 month ago
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Dear Dr Tomofuji:
Many thanks for your reply for my last issue. This time I would like to inquire about the parameter "Inactive_Gene_ratio_THR" in the function run_scLinaX. I have applied both scRN…
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Hi scDRS team,
I have the following questions concerning making custom gene set:
I would like to use the dataset downloaded from the GWAS database for a particular disease trait.
https://www.eb…