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Just wanted to flag this. I can't recall the reason at the moment (could be namespace collision), but it was advised to us from the Pyro team to use a torch `nn.Module` to wrap a pyro model and pyro g…
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Thanks for working on multi table support! I've been using the recent [_multi_table_ branch](https://github.com/scverse/spatialdata/tree/multi_table) and it's been working pretty well so far. One nice…
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Hi,
I just updated the package and reading the Xenium dataset (the publicly available breast cancer dataset) I get the following error. This was working before.
```
INFO reading …
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Unclear to me what this is for:
https://github.com/scverse/cookiecutter-scverse/blob/fb25fef4eb7ef66b37040684698ba7a15efa0af6/%7B%7Bcookiecutter.project_name%7D%7D/docs/conf.py#L98-L110
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I have a geopandas object with a Polygon geometry column (representing cell segmentation). I attempt to add it to my xenium-project-derived SD object:
```
sd = spatialdata_io.xenium(args.xenium_…
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (op…
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https://github.com/scverse/spatialdata-plot/blame/3e09dd1491bcb0eb0f1f897e1f7189a1ac083d9f/pyproject.toml#L29C2-L30
there is no need to keep them in general requirements as they are docs specific
giovp updated
11 months ago
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Hi, is this still maintained?
We’d be interested to include something like it into scanpy.
In case you’re no longer interested in maintenance, maybe we could transfer this project to scverse and…
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## Description
Hej!
When using the function `sq.gr.spatial_neighbors` and specifying `n_neighs=k` with `radius=None`, my expectation is that the resulting connectivity matrix would give me the …
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (option…
hl324 updated
7 months ago