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When I successfully use commond "vg giraffe -Z a.gbz -m a.min -d a.dist -f sim.fq >mapped.gam"
I follow the [https://github.com/vgteam/vg/wiki/SV-Genotyping-and-variant-calling](url) and use vg augme…
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WARNING: API 'variant.getJavaCompile()' is obsolete and has been replaced with 'variant.getJavaCompileProvider()'.
It will be removed at the end of 2019.
For more information, see https://d.androi…
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Hey there, I am running the containerised version of clair3 with 32GB of mem. Its running on a small viral genome so shouldnt be too taxing. The seg fault happens and then the merged vcf is just the p…
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## Bug Report
### Affected tool(s) or class(es)
GATK HaplotypeCaller and GenomicsDBImport
### Affected version(s)
Version="4.1.1.0"
### Description
In 7% of 8M variants in a 9…
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Hi I'm getting this error on testdata in a dev version of fieldbioinformatics with clair3 called data (attached), I've confirmed that this occurs with version 0.4.5 and 1.0.0 full traceback below.
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Alsalam alikm..
I hope this finds you in the best of states..
So, back again!
Due to its importance, we found it better to shine some light on proposal writing this time before we commit into out t…
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**Describe the bug**
I'm currently working on a shield definition for a custom shield targeted to be connected to the ST morpho headers of the _nucleo_g071rb_ and _nucleo_g0b1re_ boards (see bo…
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Hi @heathsc
I'm using BSCall software to detect some variants from whole genome bisulfite sequencing data.
My version of bs_call is 2.1.7
When I tried to compare the result of BSCall and NA1…
tahuh updated
2 years ago
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I have successfully done with this command -- " vg giraffe -Z hprc-v1.1-mc-chm13.gbz -d /hprc-v1.1-mc-chm13.dist -m hprc-v1.1-mc-chm13.min -p -t 64 -f xxx.fastq > map.gam"
but when I try to do vari…
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In table.smk, the rule vembrane_table calls get_vembrane_config to get the parameters for the vembrane header table. This should add the annotation fields from config.yaml.
Example from config.y…