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Hello every one!
I have 10X Genomics output from multiple runs. From each run, I created a Seurat Object from the `output/filtered_gene_bc_matrices/` folders and then merged them into 1 seurat obj…
AAA-3 updated
3 years ago
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Hello
I am trying to map the clonotype information (assemble#) to the corresponding cell.
How can I do it?
(I am using 10x data)
Thank you
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Hi,
I have a public 10xV2 sample that I am reprocessing ([SRR13313130](https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR13313130)). More specifically, I believe that the sample should be **10X Ge…
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Hi,
I'm trying to use demuxEM for my hashing data and get this error:
```
(demux) chintalh@nl003:~ % demuxEM -p 8 --generate-diagnostic-plots /gstore/data/genomics/congee_rest_runs/6123a9cf17c8a4…
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createArrowFiles works fine with the example data: scATAC_BMMC_R1.fragments.tsv.gz, however, it complains when using subset data:
I first collected 10% sample from scATAC_BMMC_R1.fragments.tsv.gz w…
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I wanted to replicate the results in the paper. However, I cant figure how to load the data into variable sce. Also unlike the 10x genomics output I know of (containings barcodes, matrixes, and featur…
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Hello all! I *think* I have issues with the BAM and GTF files but do not know how to resolve them. I only started working with Python this fortnight so any help would be useful!
I have scRNA Seq da…
AAA-3 updated
2 years ago
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https://mp.weixin.qq.com/s/Vx9xmODCiF2nqnlNlpB4Cw
ixxmu updated
2 years ago
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https://mp.weixin.qq.com/s/Vx9xmODCiF2nqnlNlpB4Cw
ixxmu updated
2 years ago