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Hello, I am currently running SComatic with scATAC data, but I encountered some issues when running the second step, BaseCellCounter.py. Here is my code and the output:
```
REF=/md01/nieyg/ref/hard-…
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I would like to use a larger tile matrix.
I'm running
```
inputFiles
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# Goal Alignment
**H2 Goal 2: The quality of CZ Census metadata is improved.**
---
# Technical Design
[Tech Spec: Increase the velocity of dataset schema evolution and dataset migration](https://d…
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Hi,
I'm trying to train my own bias model on my ATAC-seq data with the `chrombpnet bias pipeline` command. Before, I followed the preprocessing steps as described in your documentation. The traini…
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Hello I am working on the [2021 Integrating scRNA-seq and scATAC-seq data Tutorial](https://satijalab.org/seurat/articles/atacseq_integration_vignette.html)
Everything has worked until the quantify…
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I'm working with a DOGMA-seq dataset, a multimodal dataset with scATAC, scRNA, and scADT.
I've conducted weighted nearest neighbour analysis as described here: https://satijalab.org/seurat/article…
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Hi,
At this page (image below):
https://i.ibb.co/1Xqd5tv/Screenshot-2023-04-30-11-26-53.jpg
trying to use "Analyze">>"Colocalization" gives following error
```
NoSuchKey
The specified ke…
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Hello,
I am trying to apply CHOIR on my precomputed clusters from a method I developed. I am working with the PBMC3k dataset in fact.
Preprocessing is exactly followed step by step from here:
h…
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https://mp.weixin.qq.com/s/eVV3QbblZrCOUHqU-GWRJw
ixxmu updated
8 months ago
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https://mp.weixin.qq.com/s/eVV3QbblZrCOUHqU-GWRJw
ixxmu updated
8 months ago