-
Issue: IPR is loaded as raw terms. No definitions, but no relationships. this means the new tree browser is pointless for it.
I need to
* FInd/generate OBO file
* Make sure reloading will u…
-
This is an ideas discussion thread for how to allow more automated data loading with the dev seed project in mind (and perhaps this discussion/utility will end up there instead).
## Constraints
…
-
funannotate mask -i Myc_1038_2000pb_and_5x_2.fasta --cpus 12 -o Myc_1038_Mask.fasta
mask option not recognized
Usage: funannotate
version: 1.3.4
Does the mask option is integrat…
-
#### I'm trying to do following to assemble a diatom:
(1) Kneaddata/Trimmomatic for my transcript reads;
(2) Mapping the reads to my unmasked genomes;
(3) Using RNA-Spades for the transcript as…
-
Example: this gene lacks the GO annotation corresponding to its family:
https://mines.legumeinfo.org/soymine/report.do?id=6097623
While this gene in the same family has GO annotations:
https://mine…
-
I'm running InterPro scan for the next release of Wormbase ParaSite.
The pipeline choked on our input:
```
python bin/mobidb/mobidb-lite.py -a 64 -t 1 -bin /nfs/software/ensembl/RHEL7-JUL2017-core2…
-
Extensive list of XML formats listed on EBI website
http://www.ebi.ac.uk/Tools/webservices/tutorials/aa_xml_formats
-
###System information
Please enter the following information (if able).
**Galaxy Instance: test*
### Issue description
**tool**: statonlab_interproscan
**input**: https://raw.githubuser…
-
Hi, I tried to annotate my genome with funannotate(v1.3.3). When I run the test run for the sample data, for all the genomes, it stopped at filtering out bad gene models
```
[09:32 AM]: now filterin…
-
Hi there,
I discussed this already with IPS support some time ago, but the "problem" remains.
[Input Fasta](https://github.com/ebi-pf-team/interproscan/files/2004943/gi.fasta.gz):
```xml
>gi…