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https://mp.weixin.qq.com/s/SHNUaZ9NbKFiORoPnzMHmw
ixxmu updated
2 years ago
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The Teaching Web server only displays a handful of organisms even though several thousands of genomes are available on the command line.
This was a choice done earlier for didactic purposes. Howev…
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https://mp.weixin.qq.com/s/2q-wUZHPnsvtn9C3x52Zwg
ixxmu updated
2 years ago
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Draft plan for QuantSeq analysis, as very briefly discussed with @daneckaw and @DimmestP on 20th May meeting.
Here is my brain dump draft of what I would like to see. Let's discuss, adjust, agree o…
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Hi Tim,
There is one question showing below:
# Get a list of motif position frequency matrices from the JASPAR database
pfm
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Hi, Thank you for making your software available.
When I try to run, I get this error
`Error in UseMethod("select_") : no applicable method for 'select_' applied to an object of class "c('TxDb', 'A…
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## Expected behavior:
The documentation says:
> Returns: Dictionary of dataframes. Keys are module labels. Values are dataframes with -log10
> pvalues of enrichment of every amino acid in eve…
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Hello!
I am trying to run SqueezeMeta on the server. Installation and downloading db steps finished successfully (all checks are ok).
Binaries are working when called from the repository bin direct…
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hi, thank you for providing the memes package.
I run `runTomTom` with universalmotifs list input and the output (tomtom.html, tomtom.xml, tomtom.tsv) only include the last motif comparision…
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So I've been running TOBIAS fairly smoothly using JASPAR2022 Core non-redundant, however, whenever I get to the final plot:
```
2022-02-07 05:56:08 (8448) [INFO] Progress 99.9%
2022-02-07 …