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snystrom
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memes
An R interface to the MEME Suite
https://snystrom.github.io/memes/
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rna option not recognised for runStreme
#119
CharlotteAnne
closed
2 months ago
2
Some details about AME tool in MEME Suite
#118
DengEr-1993
closed
2 months ago
1
Maxmium input for RunMeme()?
#117
LuBeifang
opened
4 months ago
6
`runAme(sequences, control = "shuffle", evalue_report_threshold = 30)` get `FATAL: Template does not contain data section`
#116
danli349
opened
5 months ago
2
add more examples in runMeme doc
#115
seb-mueller
opened
6 months ago
0
runmeme breaks when providing control
#114
seb-mueller
opened
7 months ago
4
Parse genomic coord behavior changed in 5.5.4
#113
snystrom
opened
8 months ago
0
glam2 for variable length motif discovery
#112
seb-mueller
opened
8 months ago
5
TomTom error with HOCOMOCOv11 mouse database
#111
j-andrews7
opened
9 months ago
3
Memes download/path issue
#110
riley-leonard
closed
10 months ago
1
xstreme api
#109
tbrittoborges
opened
11 months ago
1
.html was not found.
#108
eladzis
opened
1 year ago
13
issues with streme and tomtom under WSL2/Rstudio server
#107
RaphMet
opened
1 year ago
4
Using memes with WSL
#106
eladzis
closed
1 year ago
3
path problems
#105
theokirkland
opened
1 year ago
5
Motif names do not always match motif object name in `runStreme` output
#104
mniederhuber
closed
7 months ago
18
Small typo in error message
#103
SorenHeidelbach
closed
1 year ago
2
runStreme() does not return evalue
#102
mniederhuber
closed
1 year ago
4
AME failed with input universalmotif list
#101
mikstapes
closed
1 year ago
10
Error in dplyr::mutate() after runMeme
#100
mwittep
closed
2 years ago
3
error runinng runTomTom
#99
whywhowhat
closed
2 years ago
5
Failed to open HTML template file
#98
sshen82
closed
2 years ago
5
Make informative error message when `parse_genomic_coord` fails
#97
snystrom
closed
2 years ago
1
AME output change in v5.4.0
#96
snystrom
opened
2 years ago
0
FATAL: Error: The symbols in background file () don't match those in the alphabet (ACGT).
#95
huang-sh
closed
2 years ago
11
Sequence sort for plot_sequence_heatmap
#94
snystrom
opened
2 years ago
0
data viz to quickly check sequence length distribution
#93
snystrom
opened
2 years ago
0
runTomTom only output the last motif comparision result when input is a list of universalmotifs
#92
huang-sh
closed
2 years ago
7
Write unit tests for new vs old importStremeXML behavior
#91
snystrom
opened
2 years ago
1
runStreme() error
#90
ivangalvan
closed
2 years ago
17
Error: Column `rc` doesn't exist.
#89
ghost
closed
2 years ago
5
Error in to_df(.) : could not find function "to_df"
#88
mdozmorov
closed
2 years ago
6
Fix runFimo to work with `readr` update.
#87
snystrom
closed
1 year ago
1
runfimo() throws an error when there are no results found and an outdir provided
#86
tensulin
closed
2 years ago
3
importStreme assigns weird names to motifs >9
#85
snystrom
closed
1 year ago
1
runStreme fails on BStringList
#84
snystrom
closed
2 years ago
0
markdown typo
#83
mniederhuber
closed
2 years ago
1
R version requirement
#82
ywang1993
closed
3 years ago
1
"~" doesn't expand when passed as database argument
#81
snystrom
closed
3 years ago
0
runTomTom doesn't throw duplicate motif message when using universalmotif input database
#80
snystrom
opened
3 years ago
0
use new universalmotif_df format
#79
snystrom
closed
3 years ago
2
flyFactorSurvey_cleaned.meme throws duplicated ID warnings in runTomTom
#78
snystrom
closed
3 years ago
3
Compatible R version
#77
dfernandezperez
closed
3 years ago
4
reenable pkgdown
#76
snystrom
closed
3 years ago
1
reenable testthat
#75
snystrom
closed
3 years ago
0
reenable covr
#74
snystrom
closed
3 years ago
0
fix system.file issue during R CMD Check examples
#73
snystrom
closed
3 years ago
0
OS Check to run* functions
#72
snystrom
opened
3 years ago
2
Installation issues
#71
sa95078
closed
3 years ago
1
is having an "outdir" argument unsafe?
#70
snystrom
opened
3 years ago
0
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