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As I read through the repo trying to understand the pipeline, I'm noticing that something that I'd find helpful is if we could have basic descriptions of more files (ideally all that are not obvious f…
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### Description of the bug
When I tried to run **nf-core/viralintegration** pipeline on `test_full` profile option I encountered an issue. An issue is related to segmentation fault (exit code 139) …
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Hi,
Thanks for this pipeline.
I was trying to use it on atac-seq data. I got the following error message:
`Caused by: Process bamCoverage (1) terminated with an error exit status (127) Comma…
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I'm not sure if there is a way to show the list of containers when running DSL2 and tower.
Could be great to have an overview of all of them and easy to check if there is an issue.
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Running in `/dcs04/lieber/lieber_jhshin/RNAseq_LIBD4020/spqz/p2_n443` - see the SPEAQeasy.log there.
I tried resuming this a few times but I couldn't figure out why I keep getting this error in this…
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Hello
I'm having issues with barcode association pipeline in MPRA flow. The key the key error message in the log is:
46199 Floating point exception(core dumped) bwa index -a bwtsw design_rmIlleg…
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Running the tool like this;
`python2 FindSV.py --bam /projects/wp3/nobackup/WGS/testCNV/RL-2047-NA12878.clean.dedup.bam --output /beegfs/wp3/WGS/CNV/2/ --config ~/git/FindSV/FindSV.conf`
Im gett…
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Hey,
I am just looking at another small workflow that I think can yield as a nice example for some general structure and modularization changes:
https://github.com/replikation/MPOA
It does n…
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Hi,
I have cloned the code and installed all the listed dependencies. When try the test file I got many error like below:
sh: 1999: xEG#LL1NSroQhncre46yjH4XzB39JsMfjq38VJeBv45u8rT7cKtpLrb65zK5849L: …
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Hi all--
I am working on a cluster that has a SLURM job handler and plan to download a few thousands SRAs for a project. I have developed a Nextflow pipeline to handle this load and was excited whe…